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Physiome aee - Physics Example 2 Mechanical System Lab

About lab

Source-faithful physiology lab for The Physics of Physiology - Example 2: A mechanical system. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-aee-physics-example-2-mechanical-system-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_q_1",
        "label": "Initial Model State Q 1 (source q_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.initial_model_state_q_1",
        "description": "Initial value for Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: metre. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "metre"
        ]
      },
      {
        "name": "initial_model_state_v_1",
        "label": "Initial Model State V 1 (source v_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.initial_model_state_v_1",
        "description": "Initial value for Model State V 1 (source v_1). Maps to source symbol `v_1`. Units: m_per_s. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "m_per_s"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.variable_labels"
      },
      {
        "name": "model_state_q_1",
        "label": "Model State Q 1 (source q_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.model_state_q_1",
        "description": "Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: metre. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_v_1",
        "label": "Model State V 1 (source v_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.model_state_v_1",
        "description": "Model State V 1 (source v_1). Maps to source symbol `v_1`. Units: m_per_s. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "main_c",
        "label": "Main C",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.main_c",
        "description": "Main C. Maps to source symbol `C`. Units: m2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_l",
        "label": "Main L",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.main_l",
        "description": "Main L. Maps to source symbol `L`. Units: Js2_per_m2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_r",
        "label": "Main R",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.main_r",
        "description": "Main R. Maps to source symbol `R`. Units: Js_per_m2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_variable_a_1",
        "label": "Model Variable A 1 (source a_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.model_variable_a_1",
        "description": "Model Variable A 1 (source a_1). Maps to source symbol `a_1`. Units: m_per_s2. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Physiome aee - Physics Example 2 Mechanical System Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model",
      "alias": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model",
      "parameters": {
        "model_path": "data/FAIRDO_BG_example_3.2.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_state"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_summary"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_trajectory"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model_variable_labels"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_2_a_mechanical_aee_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for The Physics of Physiology - Example 2: A mechanical system. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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