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Cloutier2009 - Brain Energy Metabolism Lab

About lab

Cloutier2009 - Brain Energy Metabolism This model was taken from the CellMLrepository andautomatically converted to SBML. Following thesubmission the parameters are manually encoded and annotated assp.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagecloutier2009-brain-energy-metabolism-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_brain_energy_state_1",
        "units": "native SBML value",
        "default": 0.00599865999248041,
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_1",
        "description": "Initial condition for brain energy state 1. Maps to bundled SBML symbol `V_en_GLC`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_2",
        "units": "native SBML value",
        "default": 0.00600093047858717,
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_2",
        "description": "Initial condition for brain energy state 2. Maps to bundled SBML symbol `Vn_hk`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_3",
        "units": "native SBML value",
        "default": 0.00600284722882977,
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_3",
        "description": "Initial condition for brain energy state 3. Maps to bundled SBML symbol `Vn_pgi`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_4",
        "units": "native SBML value",
        "default": 0.1755,
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_4",
        "description": "Initial condition for brain energy state 4. Maps to bundled SBML symbol `NADg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_5",
        "units": "native SBML value",
        "default": 0.13070953832961,
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_5",
        "description": "Initial condition for brain energy state 5. Maps to bundled SBML symbol `ADPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "brain_energy_state_1",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_1"
      },
      {
        "name": "brain_energy_state_2",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_2"
      },
      {
        "name": "brain_energy_state_3",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_3"
      },
      {
        "name": "brain_energy_state_4",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_4"
      },
      {
        "name": "brain_energy_state_5",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_labels"
      }
    ]
  },
  "title": "Cloutier2009 - Brain Energy Metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model",
      "alias": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model",
      "parameters": {
        "model_path": "data/BIOMD0000000554.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_observable_values"
      ],
      "from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_run_summary"
      ],
      "from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_observable_labels"
      ],
      "from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Cloutier2009 - Brain Energy Metabolism This model was taken from the CellMLrepository andautomatically converted to SBML. Following thesubmission the parameters are manually encoded and annotated assp.",
  "schema_version": "2.0"
}

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