About lab
Cloutier2009 - Brain Energy Metabolism This model was taken from the CellMLrepository andautomatically converted to SBML. Following thesubmission the parameters are manually encoded and annotated assp.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagecloutier2009-brain-energy-metabolism-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_brain_energy_state_1",
"units": "native SBML value",
"default": 0.00599865999248041,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_1",
"description": "Initial condition for brain energy state 1. Maps to bundled SBML symbol `V_en_GLC`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_2",
"units": "native SBML value",
"default": 0.00600093047858717,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_2",
"description": "Initial condition for brain energy state 2. Maps to bundled SBML symbol `Vn_hk`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_3",
"units": "native SBML value",
"default": 0.00600284722882977,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_3",
"description": "Initial condition for brain energy state 3. Maps to bundled SBML symbol `Vn_pgi`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_4",
"units": "native SBML value",
"default": 0.1755,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_4",
"description": "Initial condition for brain energy state 4. Maps to bundled SBML symbol `NADg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_5",
"units": "native SBML value",
"default": 0.13070953832961,
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.initial_brain_energy_state_5",
"description": "Initial condition for brain energy state 5. Maps to bundled SBML symbol `ADPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "brain_energy_state_1",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_1"
},
{
"name": "brain_energy_state_2",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_2"
},
{
"name": "brain_energy_state_3",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_3"
},
{
"name": "brain_energy_state_4",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_4"
},
{
"name": "brain_energy_state_5",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.brain_energy_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_labels"
}
]
},
"title": "Cloutier2009 - Brain Energy Metabolism Lab",
"models": [
{
"path": "owned/models/metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model",
"alias": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model",
"parameters": {
"model_path": "data/BIOMD0000000554.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_observable_values"
],
"from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_values"
},
{
"to": [
"visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_run_summary"
],
"from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.run_summary"
},
{
"to": [
"visualisation.metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model_observable_labels"
],
"from": "metabolism_sbml_cloutier2009_brain_energy_metabolism_biomd0000000554_model.observable_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Cloutier2009 - Brain Energy Metabolism This model was taken from the CellMLrepository andautomatically converted to SBML. Following thesubmission the parameters are manually encoded and annotated assp.",
"schema_version": "2.0"
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