About lab
The paper describes a model of pH control in tumor. Created by COPASI 4.26 (Build 213) This model is described in the article: Regulation of tumour intracellular pH: A mathematical model examining the.
Runtime
Duration10
Comms Step1
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Completed0
Failed0
Metadata
Packageal-husari2013-ph-and-lactate-in-tumor-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfulmetabolismoncologyphysiologysbmlsystemsbiologytumor-growthvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "intracellular_ph",
"label": "Intracellular pH",
"units": "native SBML value",
"default": 7.3,
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.intracellular_ph",
"description": "Intracellular pH. Overrides bundled SBML parameter `pHi`."
},
{
"name": "extracellular_ph",
"label": "Extracellular pH",
"units": "native SBML value",
"default": 7,
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.extracellular_ph",
"description": "Extracellular pH. Overrides bundled SBML parameter `pHe`."
}
],
"outputs": [
{
"name": "intracellular_hydrogen_ion",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.intracellular_hydrogen_ion",
"description": "Intracellular Hydrogen Ion observable. Maps to SBML symbol `Hi`."
},
{
"name": "extracellular_hydrogen_ion",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.extracellular_hydrogen_ion",
"description": "Extracellular Hydrogen Ion observable. Maps to SBML symbol `He`."
},
{
"name": "intracellular_lactate",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.intracellular_lactate",
"description": "Intracellular Lactate observable. Maps to SBML symbol `Li`."
},
{
"name": "extracellular_lactate",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.extracellular_lactate",
"description": "Extracellular Lactate observable. Maps to SBML symbol `Le`."
},
{
"name": "state",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"faithful",
"metabolism",
"oncology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Al-Husari2013 - pH and lactate in tumor Lab",
"models": [
{
"path": "owned/models/oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model",
"alias": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model",
"provenance": {
"owned_path": "owned/models/oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model_state"
],
"from": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.state"
},
{
"to": [
"visualisation.oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model_summary"
],
"from": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model_species_labels"
],
"from": "oncology_sbml_al_husari2013_ph_and_lactate_in_tumor_biomd0000000805_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "The paper describes a model of pH control in tumor. Created by COPASI 4.26 (Build 213) This model is described in the article: Regulation of tumour intracellular pH: A mathematical model examining the.",
"schema_version": "2.0"
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