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Jol2012 Yeastmetabolism Efmanalysis Lab

About lab

To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. It can be used to explore systemsbiology jol2012 yeastmetabolism efmanalysis model1201230000 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagejol2012-yeastmetabolism-efmanalysis-lab
Created2026-05-17
Updated2026-05-17
metabolismmicrobiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_zymst_c",
        "label": "Initial Zymst C",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_zymst_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_zymst_c`."
      },
      {
        "name": "initial_xu5p_d_c",
        "label": "Initial Xu5p D C",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_xu5p_d_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_xu5p_DASH_D_c`."
      },
      {
        "name": "initial_val_l_c",
        "label": "Initial Val L C",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_val_l_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_val_DASH_L_c`."
      },
      {
        "name": "initial_ump_c",
        "label": "Initial Ump C",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_ump_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_ump_c`."
      },
      {
        "name": "initial_tyr_l_c",
        "label": "Initial Tyr L C",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_tyr_l_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_tyr_DASH_L_c`."
      },
      {
        "name": "initial_trp_l_c",
        "label": "Initial Trp L C",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.initial_trp_l_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_trp_DASH_L_c`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.species_labels"
      },
      {
        "name": "zymst_c",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.zymst_c"
      },
      {
        "name": "xu5p_d_c",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.xu5p_d_c"
      },
      {
        "name": "val_l_c",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.val_l_c"
      },
      {
        "name": "ump_c",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.ump_c"
      },
      {
        "name": "tyr_l_c",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.tyr_l_c"
      },
      {
        "name": "trp_l_c",
        "maps_to": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.trp_l_c"
      }
    ]
  },
  "tags": [
    "metabolism",
    "microbiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Jol2012 Yeastmetabolism Efmanalysis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model",
      "alias": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model_state"
      ],
      "from": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model_summary"
      ],
      "from": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_jol2012_yeastmetabolism_efmanalysis_model1201230000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. It can be used to explore systemsbiology jol2012 yeastmetabolism efmanalysis model1201230000 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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