About lab
Source-faithful physiology lab for Friel, 1995. Public controls and outputs are mapped to real source symbols for calcium handling.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagefriel1995-calcium-dynamics-558-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_s",
"label": "Initial Ca S",
"maps_to": "physiology_cellml_friel_1995_558_model.initial_ca_s",
"description": "Initial value for Ca S. Maps to source symbol `Ca_s`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"nanomolar"
]
},
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_friel_1995_558_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"nanomolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_friel_1995_558_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_friel_1995_558_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_friel_1995_558_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_friel_1995_558_model.variable_labels"
},
{
"name": "ca_s",
"label": "Ca S",
"maps_to": "physiology_cellml_friel_1995_558_model.ca_s",
"description": "Ca S. Maps to source symbol `Ca_s`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_friel_1995_558_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_i_ss",
"label": "Ca I Ss",
"maps_to": "physiology_cellml_friel_1995_558_model.ca_i_ss",
"description": "Ca I Ss. Maps to source symbol `Ca_i_ss`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_s_ss",
"label": "Ca S Ss",
"maps_to": "physiology_cellml_friel_1995_558_model.ca_s_ss",
"description": "Ca S Ss. Maps to source symbol `Ca_s_ss`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_calcium",
"label": "Extracellular Calcium",
"maps_to": "physiology_cellml_friel_1995_558_model.extracellular_calcium",
"description": "Extracellular Calcium. Maps to source symbol `Ca_o`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "gamma",
"label": "Gamma",
"maps_to": "physiology_cellml_friel_1995_558_model.gamma",
"description": "Gamma. Maps to source symbol `gamma`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Friel1995 - Calcium Dynamics 558 Lab",
"models": [
{
"path": "owned/models/physiology_cellml_friel_1995_558_model",
"alias": "physiology_cellml_friel_1995_558_model",
"parameters": {
"model_path": "data/friel_1995.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_friel_1995_558_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_friel_1995_558_model_state"
],
"from": "physiology_cellml_friel_1995_558_model.state"
},
{
"to": [
"visualisation.physiology_cellml_friel_1995_558_model_summary"
],
"from": "physiology_cellml_friel_1995_558_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_friel_1995_558_model_trajectory"
],
"from": "physiology_cellml_friel_1995_558_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_friel_1995_558_model_variable_labels"
],
"from": "physiology_cellml_friel_1995_558_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Friel, 1995. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
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