Berzins2022 - Crypthecodinium Cohnii Ethanol Uptak Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_6_phosphate_c",
        "label": "Initial Glucose 6 Phosphate C",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.initial_glucose_6_phosphate_c",
        "description": "Initial value for Glucose 6 Phosphate C. Maps to source symbol `glucose_6_phosphate_c`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "initial_glucose_c",
        "label": "Initial Glucose C",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.initial_glucose_c",
        "description": "Initial value for Glucose C. Maps to source symbol `glucose_c`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.species_labels"
      },
      {
        "name": "glucose_6_phosphate_c",
        "label": "Glucose 6 Phosphate C",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.glucose_6_phosphate_c",
        "description": "Glucose 6 Phosphate C. Maps to source symbol `glucose_6_phosphate_c`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "glucose_c",
        "label": "Glucose C",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.glucose_c",
        "description": "Glucose C. Maps to source symbol `glucose_c`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "glucose_ex",
        "label": "Glucose Ex",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.glucose_ex",
        "description": "Glucose Ex. Maps to source symbol `glucose_ex`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acetaldehyde_c",
        "label": "Acetaldehyde C",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.acetaldehyde_c",
        "description": "Acetaldehyde C. Maps to source symbol `acetaldehyde_c`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acetaldehyde_m",
        "label": "Acetaldehyde M",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.acetaldehyde_m",
        "description": "Acetaldehyde M. Maps to source symbol `acetaldehyde_m`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acetate_m",
        "label": "Acetate M",
        "maps_to": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.acetate_m",
        "description": "Acetate M. Maps to source symbol `acetate_m`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Berzins2022 - Crypthecodinium Cohnii Ethanol Uptak Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model",
      "alias": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model",
      "parameters": {
        "model_path": "data/MODEL2112290001.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model_state"
      ],
      "from": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model_summary"
      ],
      "from": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model_trajectory"
      ],
      "from": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model_species_labels"
      ],
      "from": "physiology_sbml_berzins2022_crypthecodinium_cohnii_ethanol_uptak_model2112290001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Berzins2022 - Crypthecodinium cohnii: ethanol uptake for production of DHA precursor acetyl-CoA. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
  "schema_version": "2.0"
}