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Physiome afe - Bond Graph Cellml 2 0 Lab

About lab

Source-faithful physiology lab for Bond Graph CellML 2.0 models. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-afe-bond-graph-cellml-2-0-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_main_x",
        "label": "Initial Main X",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.initial_main_x",
        "description": "Initial value for Main X. Maps to source symbol `X`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.variable_labels"
      },
      {
        "name": "main_x",
        "label": "Main X",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_x",
        "description": "Main X. Maps to source symbol `X`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_f",
        "label": "Main F",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_f",
        "description": "Main F. Maps to source symbol `F`. Units: C_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_p1",
        "label": "Main P1",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_p1",
        "description": "Main P1. Maps to source symbol `p1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_p2",
        "label": "Main P2",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.main_p2",
        "description": "Main P2. Maps to source symbol `p2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_n_ai",
        "label": "Model Parameter N Ai (source n_Ai)",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.model_parameter_n_ai",
        "description": "Model Parameter N Ai (source n_Ai). Maps to source symbol `n_Ai`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_parameter_n_ao",
        "label": "Model Parameter N Ao (source n_Ao)",
        "maps_to": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.model_parameter_n_ao",
        "description": "Model Parameter N Ao (source n_Ao). Maps to source symbol `n_Ao`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Physiome afe - Bond Graph Cellml 2 0 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bond_graph_cellml_2_0_models_afe_model",
      "alias": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model",
      "parameters": {
        "model_path": "data/test_1.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bond_graph_cellml_2_0_models_afe_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_state"
      ],
      "from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_summary"
      ],
      "from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_trajectory"
      ],
      "from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bond_graph_cellml_2_0_models_afe_model_variable_labels"
      ],
      "from": "physiology_cellml_bond_graph_cellml_2_0_models_afe_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Bond Graph CellML 2.0 models. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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