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Chenxf2008 Cicr Lab

About lab

The model reproduces the plots in Figures 1 and 2. Note that the units of the time scale 'A' are not right in the paper, it was corrected by the curator.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagechenxf2008-cicr-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_s2",
        "label": "Initial Model State S2",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.initial_model_state_s2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S2`."
      },
      {
        "name": "initial_s2_a",
        "label": "Initial S2 A",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.initial_s2_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S2a`."
      },
      {
        "name": "initial_orai1",
        "label": "Initial Orai1",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.initial_orai1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Orai1`."
      },
      {
        "name": "initial_model_state_s4",
        "label": "Initial Model State S4",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.initial_model_state_s4",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S4`."
      },
      {
        "name": "initial_model_state_oc",
        "label": "Initial Model State Oc",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.initial_model_state_oc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Oc`."
      },
      {
        "name": "initial_model_state_o_o",
        "label": "Initial Model State O O",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.initial_model_state_o_o",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `O_o`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.species_labels"
      },
      {
        "name": "model_state_s2",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.model_state_s2"
      },
      {
        "name": "s2_a",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.s2_a"
      },
      {
        "name": "orai1",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.orai1"
      },
      {
        "name": "model_state_s4",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.model_state_s4"
      },
      {
        "name": "model_state_oc",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.model_state_oc"
      },
      {
        "name": "o_o",
        "maps_to": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.o_o"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Chenxf2008 Cicr Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model",
      "alias": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model_state"
      ],
      "from": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model_summary"
      ],
      "from": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model_species_labels"
      ],
      "from": "systemsbiology_sbml_chenxf2008_cicr_biomd0000000202_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the plots in Figures 1 and 2. Note that the units of the time scale 'A' are not right in the paper, it was corrected by the curator.",
  "schema_version": "2.0"
}

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