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Yang2012 - cancer growth with angiogenesis Lab

About lab

The paper describes a model of tumor growth with angiogenesis. Created by COPASI 4.26 (Build 213) This model is described in the article: Mathematical modeling of solid cancer growth with angiogenesis.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageyang2012-cancer-growth-with-angiogenesis-lab
Created2026-05-16
Updated2026-05-16
angiogenesisbiomodels_ebicuratedfaithfulmicroenvironmentoncologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cancer_cells",
        "label": "Cancer Cells",
        "units": "native SBML value",
        "default": 9,
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.initial_cancer_cells",
        "description": "Initial Cancer Cells. Sets the initial value of bundled SBML symbol `C`."
      },
      {
        "name": "initial_endothelial_cells",
        "label": "Endothelial Cells",
        "units": "native SBML value",
        "default": 10,
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.initial_endothelial_cells",
        "description": "Initial Endothelial Cells. Sets the initial value of bundled SBML symbol `E`."
      }
    ],
    "outputs": [
      {
        "name": "cancer_cells",
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.cancer_cells",
        "description": "Cancer Cells observable. Maps to SBML symbol `C`."
      },
      {
        "name": "endothelial_cells",
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.endothelial_cells",
        "description": "Endothelial Cells observable. Maps to SBML symbol `E`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "angiogenesis",
    "biomodels_ebi",
    "curated",
    "faithful",
    "microenvironment",
    "oncology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "Yang2012 - cancer growth with angiogenesis Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model",
      "alias": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model_state"
      ],
      "from": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model_summary"
      ],
      "from": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model_species_labels"
      ],
      "from": "oncology_sbml_yang2012_cancer_growth_with_angiogenesis_biomd0000000796_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "The paper describes a model of tumor growth with angiogenesis. Created by COPASI 4.26 (Build 213) This model is described in the article: Mathematical modeling of solid cancer growth with angiogenesis.",
  "schema_version": "2.0"
}

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