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Holmes2006 - Teaching Classic Papers Hill Muscle Contraction Lab

About lab

Source-faithful physiology lab for Holmes 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageholmes2006-teaching-classic-papers-hill-muscle-contraction-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_l_ce",
        "label": "Initial Model State L Ce (source L_ce)",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.initial_model_state_l_ce",
        "description": "Initial value for Model State L Ce (source L_ce). Maps to source symbol `L_ce`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.variable_labels"
      },
      {
        "name": "model_state_l_ce",
        "label": "Model State L Ce (source L_ce)",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.model_state_l_ce",
        "description": "Model State L Ce (source L_ce). Maps to source symbol `L_ce`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "alpha",
        "label": "Alpha",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.alpha",
        "description": "Alpha. Maps to source symbol `alpha`. Units: mNpermmsq. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "contraction_a",
        "label": "Contraction A",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_a",
        "description": "Contraction A. Maps to source symbol `a`. Units: mNpermmsq. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "contraction_b",
        "label": "Contraction B",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_b",
        "description": "Contraction B. Maps to source symbol `b`. Units: pms. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "contraction_l",
        "label": "Contraction L",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_l",
        "description": "Contraction L. Maps to source symbol `L`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "contraction_p",
        "label": "Contraction P",
        "maps_to": "physiology_cellml_holmes_2006_holmes2006_model.contraction_p",
        "description": "Contraction P. Maps to source symbol `P`. Units: mNpermmsq. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Holmes2006 - Teaching Classic Papers Hill Muscle Contraction Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_holmes_2006_holmes2006_model",
      "alias": "physiology_cellml_holmes_2006_holmes2006_model",
      "parameters": {
        "model_path": "data/holmes_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_holmes_2006_holmes2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_holmes_2006_holmes2006_model_state"
      ],
      "from": "physiology_cellml_holmes_2006_holmes2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_holmes_2006_holmes2006_model_summary"
      ],
      "from": "physiology_cellml_holmes_2006_holmes2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_holmes_2006_holmes2006_model_trajectory"
      ],
      "from": "physiology_cellml_holmes_2006_holmes2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_holmes_2006_holmes2006_model_variable_labels"
      ],
      "from": "physiology_cellml_holmes_2006_holmes2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Holmes 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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