Vaseghi1999 - Pentose Phosphate Pathway Yeast Saccharomyces Cerevisiae Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_mg_atp_concentration",
        "label": "Initial C Mg ATP Concentration",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.initial_c_mg_atp_concentration",
        "description": "Initial value for C Mg ATP Concentration. Maps to source symbol `C_MgATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_c_nadp_concentration",
        "label": "Initial C Nadp Concentration",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.initial_c_nadp_concentration",
        "description": "Initial value for C Nadp Concentration. Maps to source symbol `C_NADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.variable_labels"
      },
      {
        "name": "c_mg_atp_concentration",
        "label": "C Mg ATP Concentration",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.c_mg_atp_concentration",
        "description": "C Mg ATP Concentration. Maps to source symbol `C_MgATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_nadp_concentration",
        "label": "C Nadp Concentration",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.c_nadp_concentration",
        "description": "C Nadp Concentration. Maps to source symbol `C_NADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_nadph_concentration",
        "label": "C Nadph Concentration",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.c_nadph_concentration",
        "description": "C Nadph Concentration. Maps to source symbol `C_NADPH`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_mg_atp_1",
        "label": "I Mg ATP 1",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.i_mg_atp_1",
        "description": "I Mg ATP 1. Maps to source symbol `I_MgATP_1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_mg_atp_2",
        "label": "I Mg ATP 2",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.i_mg_atp_2",
        "description": "I Mg ATP 2. Maps to source symbol `I_MgATP_2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ki_mg_atp_1",
        "label": "Ki Mg ATP 1",
        "maps_to": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.ki_mg_atp_1",
        "description": "Ki Mg ATP 1. Maps to source symbol `Ki_MgATP_1`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Vaseghi1999 - Pentose Phosphate Pathway Yeast Saccharomyces Cerevisiae Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model",
      "alias": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model",
      "parameters": {
        "model_path": "data/vaseghi_baumeister_rizzi_reuss_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model_state"
      ],
      "from": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model_summary"
      ],
      "from": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model_trajectory"
      ],
      "from": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.trajectory"
    },
    {
      "to": [
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      ],
      "from": "physiology_cellml_vaseghi_baumeister_rizzi_reuss_1999_vaseghibaumeisterrizzireuss1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Vaseghi, Baumeister, Rizzi, Reuss, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}