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Physiome 525 - Courtemanche Ramirez Nattel Under Atrial Fibrillation Lab

About lab

Source-faithful physiology lab for Courtemanche, Ramirez, and Nattel model under atrial fibrillation. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-525-courtemanche-ramirez-nattel-under-atrial-fibrillati
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage_v",
        "label": "Initial Membrane Voltage V",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.initial_membrane_voltage_v",
        "description": "Initial value for Membrane Voltage V. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.variable_labels"
      },
      {
        "name": "membrane_voltage_v",
        "label": "Membrane Voltage V",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.membrane_voltage_v",
        "description": "Membrane Voltage V. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_k",
        "label": "Sodium Current I Na K",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.sodium_current_i_na_k",
        "description": "Sodium Current I Na K. Maps to source symbol `i_NaK`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_k_max",
        "label": "Sodium Current I Na K Max",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.sodium_current_i_na_k_max",
        "description": "Sodium Current I Na K Max. Maps to source symbol `i_NaK_max`. Units: picoA_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_h_gate",
        "label": "Sodium H Gate",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.sodium_h_gate",
        "description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_j_gate",
        "label": "Sodium J Gate",
        "maps_to": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.sodium_j_gate",
        "description": "Sodium J Gate. Maps to source symbol `j`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 525 - Courtemanche Ramirez Nattel Under Atrial Fibrillation Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model",
      "alias": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model",
      "parameters": {
        "model_path": "data/Andy_CRN_AF.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model_state"
      ],
      "from": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model_summary"
      ],
      "from": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model_trajectory"
      ],
      "from": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model_variable_labels"
      ],
      "from": "physiology_cellml_courtemanche_ramirez_and_nattel_model_under_atri_525_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Courtemanche, Ramirez, and Nattel model under atrial fibrillation. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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