About lab
Model reproduces the dynamics of ATP and NADH as depicted in Fig 4 of the paper. It can be used to explore systemsbiology wolf2000 glycolytic oscillations BioModels0000000206 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagewolf2000-glycolytic-oscillations-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_pyruvate",
"label": "Initial Pyruvate",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_pyruvate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s5`."
},
{
"name": "initial_f16_p",
"label": "Initial F16 P",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_f16_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s2`."
},
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `at`."
},
{
"name": "initial_glucose",
"label": "Initial Glucose",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_glucose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s1`."
},
{
"name": "initial_model_state_3_pg",
"label": "Initial Model State 3 Pg",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_model_state_3_pg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s4`."
},
{
"name": "initial_triose_gly3_phos_dhap",
"label": "Initial Triose Gly3 Phos Dhap",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_triose_gly3_phos_dhap",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s3`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.species_labels"
},
{
"name": "pyruvate",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.pyruvate"
},
{
"name": "f16_p",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.f16_p"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.atp"
},
{
"name": "glucose",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.glucose"
},
{
"name": "model_state_3_pg",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.model_state_3_pg"
},
{
"name": "triose_gly3_phos_dhap",
"maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.triose_gly3_phos_dhap"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Wolf2000 Glycolytic Oscillations Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model",
"alias": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model_state"
],
"from": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model_summary"
],
"from": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model_species_labels"
],
"from": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Model reproduces the dynamics of ATP and NADH as depicted in Fig 4 of the paper. It can be used to explore systemsbiology wolf2000 glycolytic oscillations BioModels0000000206 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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