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Wolf2000 Glycolytic Oscillations Lab

About lab

Model reproduces the dynamics of ATP and NADH as depicted in Fig 4 of the paper. It can be used to explore systemsbiology wolf2000 glycolytic oscillations BioModels0000000206 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagewolf2000-glycolytic-oscillations-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_pyruvate",
        "label": "Initial Pyruvate",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_pyruvate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s5`."
      },
      {
        "name": "initial_f16_p",
        "label": "Initial F16 P",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_f16_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s2`."
      },
      {
        "name": "initial_model_state_atp",
        "label": "Initial Model State ATP",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_model_state_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `at`."
      },
      {
        "name": "initial_glucose",
        "label": "Initial Glucose",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_glucose",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s1`."
      },
      {
        "name": "initial_model_state_3_pg",
        "label": "Initial Model State 3 Pg",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_model_state_3_pg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s4`."
      },
      {
        "name": "initial_triose_gly3_phos_dhap",
        "label": "Initial Triose Gly3 Phos Dhap",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.initial_triose_gly3_phos_dhap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s3`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.species_labels"
      },
      {
        "name": "pyruvate",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.pyruvate"
      },
      {
        "name": "f16_p",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.f16_p"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.atp"
      },
      {
        "name": "glucose",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.glucose"
      },
      {
        "name": "model_state_3_pg",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.model_state_3_pg"
      },
      {
        "name": "triose_gly3_phos_dhap",
        "maps_to": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.triose_gly3_phos_dhap"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Wolf2000 Glycolytic Oscillations Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model",
      "alias": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model_state"
      ],
      "from": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model_summary"
      ],
      "from": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model_species_labels"
      ],
      "from": "systemsbiology_sbml_wolf2000_glycolytic_oscillations_biomd0000000206_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Model reproduces the dynamics of ATP and NADH as depicted in Fig 4 of the paper. It can be used to explore systemsbiology wolf2000 glycolytic oscillations BioModels0000000206 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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