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Physiome b01 - Mathematical Neural Regulation Phasic Contractions Slow Lab

About lab

Source-faithful physiology lab for A mathematical model of the neural regulation of phasic contractions and slow waves in the distal stomach. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-b01-mathematical-neural-regulation-phasic-contractions
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `Vm`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "voltage_units"
        ]
      },
      {
        "name": "initial_intracellular_calcium",
        "label": "Initial Intracellular Calcium",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.initial_intracellular_calcium",
        "description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `Vm`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `I_CaT`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `I_Na_SM`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_bna",
        "label": "Sodium Current I Bna",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.sodium_current_i_bna",
        "description": "Sodium Current I Bna. Maps to source symbol `I_BNa`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "vm_sm",
        "label": "Vm Sm",
        "maps_to": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.vm_sm",
        "description": "Vm Sm. Maps to source symbol `Vm_SM`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome b01 - Mathematical Neural Regulation Phasic Contractions Slow Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model",
      "alias": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model",
      "parameters": {
        "model_path": "data/ICC_SMC_Neuro.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_state"
      ],
      "from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_summary"
      ],
      "from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_trajectory"
      ],
      "from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model_variable_labels"
      ],
      "from": "physiology_cellml_a_mathematical_model_of_the_neural_regulation_of_b01_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for A mathematical model of the neural regulation of phasic contractions and slow waves in the distal stomach. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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