About lab
Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesharp2013-lipopolysaccharide-induced-nfkb-activation-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebinfkbtlr-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cd14",
"label": "Initial CD14",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.initial_cd14",
"description": "Initial level of CD14. Maps to SBML symbol `species_1`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_irak4_state",
"label": "Initial source-defined IRAK4 state",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.initial_source_defined_irak4_state",
"description": "Initial level of source-defined IRAK4 state. Maps to SBML symbol `species_2`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_lbp_state",
"label": "Initial source-defined LBP state",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.initial_source_defined_lbp_state",
"description": "Initial level of source-defined LBP state. Maps to SBML symbol `species_3`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_tnfa_state",
"label": "source-defined TNFA state",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.source_defined_tnfa_state",
"description": "source-defined TNFA state. Maps to SBML symbol `species_24` and is emitted in native SBML units."
},
{
"name": "tnf_receptor_1",
"label": "TNF receptor 1",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.tnf_receptor_1",
"description": "TNF receptor 1. Maps to SBML symbol `species_25` and is emitted in native SBML units."
},
{
"name": "tnfa_tnf_receptor_1_traf2_tradd_rip1",
"label": "Tnfa TNF receptor 1 TRAF2 TRADD RIP1",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.tnfa_tnf_receptor_1_traf2_tradd_rip1",
"description": "Tnfa TNF receptor 1 TRAF2 TRADD RIP1. Maps to SBML symbol `species_28` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"nfkb",
"tlr-signaling"
],
"title": "Sharp2013 - Lipopolysaccharide induced NFkB activation Lab",
"models": [
{
"path": "owned/models/signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model",
"alias": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model_state"
],
"from": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model_summary"
],
"from": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model_species_labels"
],
"from": "signaling_sbml_sharp2013_lipopolysaccharide_induced_nfkb_activa_biomd0000000489_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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