About lab
These selections of models are described in the paper:Cellular interactions constrain tumor growthby Jeffrey West and Paul K. NewtonSignificance:A mathematical model relating tumor heterogeneity at th.
Runtime
Duration10
Comms Step1
Runs
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Metadata
Packagewest2019-cellular-interactions-constrain-tumor-growth-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tumor_at_exp_lin_growth",
"label": "Tumor at Exp Lin growth",
"units": "native SBML value",
"default": 1,
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_exp_lin_growth",
"description": "Initial Tumor at Exp Lin growth. Sets the initial value of bundled SBML symbol `tumor_at_Exp_Lin_growth`."
},
{
"name": "initial_tumor_at_gen",
"label": "Tumor at Gen",
"units": "native SBML value",
"default": 1,
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_gen",
"description": "Initial Tumor at Gen. logistic growth. Sets the initial value of bundled SBML symbol `tumor_at_Gen__logistic_growth`."
},
{
"name": "initial_tumor_at_gomp",
"label": "Tumor at Gomp",
"units": "native SBML value",
"default": 1,
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_gomp",
"description": "Initial Tumor at Gomp. growth. Sets the initial value of bundled SBML symbol `tumor_at_Gomp__growth`."
},
{
"name": "initial_tumor_at_power_growth",
"label": "Tumor at Power growth",
"units": "native SBML value",
"default": 1,
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_power_growth",
"description": "Initial Tumor at Power growth. Sets the initial value of bundled SBML symbol `tumor_at_Power_growth`."
},
{
"name": "initial_tumor_at_von_bert",
"label": "Tumor at Von Bert",
"units": "native SBML value",
"default": 1,
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_von_bert",
"description": "Initial Tumor at Von Bert. growth. Sets the initial value of bundled SBML symbol `tumor_at_Von_Bert__growth`."
},
{
"name": "initial_tumor_at_exp_growth",
"label": "Tumor at Exp growth",
"units": "native SBML value",
"default": 1,
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_exp_growth",
"description": "Initial Tumor at Exp growth. Sets the initial value of bundled SBML symbol `tumor_at_Exp_growth`."
}
],
"outputs": [
{
"name": "tumor_at_exp_lin_growth",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_exp_lin_growth",
"description": "Tumor at Exp Lin growth observable. Maps to SBML symbol `tumor_at_Exp_Lin_growth`."
},
{
"name": "tumor_at_gen_logistic_growth",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_gen_logistic_growth",
"description": "Tumor at Gen. logistic growth observable. Maps to SBML symbol `tumor_at_Gen__logistic_growth`."
},
{
"name": "tumor_at_gomp_growth",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_gomp_growth",
"description": "Tumor at Gomp. growth observable. Maps to SBML symbol `tumor_at_Gomp__growth`."
},
{
"name": "tumor_at_power_growth",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_power_growth",
"description": "Tumor at Power growth observable. Maps to SBML symbol `tumor_at_Power_growth`."
},
{
"name": "tumor_at_von_bert_growth",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_von_bert_growth",
"description": "Tumor at Von Bert. growth observable. Maps to SBML symbol `tumor_at_Von_Bert__growth`."
},
{
"name": "tumor_at_exp_growth",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_exp_growth",
"description": "Tumor at Exp growth observable. Maps to SBML symbol `tumor_at_Exp_growth`."
},
{
"name": "state",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"faithful",
"oncology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "West2019 - Cellular interactions constrain tumor growth Lab",
"models": [
{
"path": "owned/models/oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model",
"alias": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model",
"provenance": {
"owned_path": "owned/models/oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model_state"
],
"from": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.state"
},
{
"to": [
"visualisation.oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model_summary"
],
"from": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model_species_labels"
],
"from": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "These selections of models are described in the paper:Cellular interactions constrain tumor growthby Jeffrey West and Paul K. NewtonSignificance:A mathematical model relating tumor heterogeneity at th.",
"schema_version": "2.0"
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