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West2019 - Cellular interactions constrain tumor growth Lab

About lab

These selections of models are described in the paper:Cellular interactions constrain tumor growthby Jeffrey West and Paul K. NewtonSignificance:A mathematical model relating tumor heterogeneity at th.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
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Metadata

Packagewest2019-cellular-interactions-constrain-tumor-growth-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_tumor_at_exp_lin_growth",
        "label": "Tumor at Exp Lin growth",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_exp_lin_growth",
        "description": "Initial Tumor at Exp Lin growth. Sets the initial value of bundled SBML symbol `tumor_at_Exp_Lin_growth`."
      },
      {
        "name": "initial_tumor_at_gen",
        "label": "Tumor at Gen",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_gen",
        "description": "Initial Tumor at Gen. logistic growth. Sets the initial value of bundled SBML symbol `tumor_at_Gen__logistic_growth`."
      },
      {
        "name": "initial_tumor_at_gomp",
        "label": "Tumor at Gomp",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_gomp",
        "description": "Initial Tumor at Gomp. growth. Sets the initial value of bundled SBML symbol `tumor_at_Gomp__growth`."
      },
      {
        "name": "initial_tumor_at_power_growth",
        "label": "Tumor at Power growth",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_power_growth",
        "description": "Initial Tumor at Power growth. Sets the initial value of bundled SBML symbol `tumor_at_Power_growth`."
      },
      {
        "name": "initial_tumor_at_von_bert",
        "label": "Tumor at Von Bert",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_von_bert",
        "description": "Initial Tumor at Von Bert. growth. Sets the initial value of bundled SBML symbol `tumor_at_Von_Bert__growth`."
      },
      {
        "name": "initial_tumor_at_exp_growth",
        "label": "Tumor at Exp growth",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.initial_tumor_at_exp_growth",
        "description": "Initial Tumor at Exp growth. Sets the initial value of bundled SBML symbol `tumor_at_Exp_growth`."
      }
    ],
    "outputs": [
      {
        "name": "tumor_at_exp_lin_growth",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_exp_lin_growth",
        "description": "Tumor at Exp Lin growth observable. Maps to SBML symbol `tumor_at_Exp_Lin_growth`."
      },
      {
        "name": "tumor_at_gen_logistic_growth",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_gen_logistic_growth",
        "description": "Tumor at Gen. logistic growth observable. Maps to SBML symbol `tumor_at_Gen__logistic_growth`."
      },
      {
        "name": "tumor_at_gomp_growth",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_gomp_growth",
        "description": "Tumor at Gomp. growth observable. Maps to SBML symbol `tumor_at_Gomp__growth`."
      },
      {
        "name": "tumor_at_power_growth",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_power_growth",
        "description": "Tumor at Power growth observable. Maps to SBML symbol `tumor_at_Power_growth`."
      },
      {
        "name": "tumor_at_von_bert_growth",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_von_bert_growth",
        "description": "Tumor at Von Bert. growth observable. Maps to SBML symbol `tumor_at_Von_Bert__growth`."
      },
      {
        "name": "tumor_at_exp_growth",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.tumor_at_exp_growth",
        "description": "Tumor at Exp growth observable. Maps to SBML symbol `tumor_at_Exp_growth`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "biomodels_ebi",
    "curated",
    "faithful",
    "oncology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "West2019 - Cellular interactions constrain tumor growth Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model",
      "alias": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model_state"
      ],
      "from": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model_summary"
      ],
      "from": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model_species_labels"
      ],
      "from": "oncology_sbml_west2019_cellular_interactions_constrain_tumor_g_biomd0000000820_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "These selections of models are described in the paper:Cellular interactions constrain tumor growthby Jeffrey West and Paul K. NewtonSignificance:A mathematical model relating tumor heterogeneity at th.",
  "schema_version": "2.0"
}

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