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Faville2008 Updepolarization Lab

About lab

This a model from the article: A biophysically based mathematical model of unitary potential activity ininterstitial cells of Cajal. Faville RA, Pullan AJ, Sanders KM, Smith NP.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagefaville2008-updepolarization-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_vm",
        "label": "Initial Model State Vm",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.initial_model_state_vm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Vm`."
      },
      {
        "name": "initial_phi3",
        "label": "Initial Phi3",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.initial_phi3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `phi3`."
      },
      {
        "name": "initial_model_state_ns1",
        "label": "Initial Model State NS1",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.initial_model_state_ns1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NS1`."
      },
      {
        "name": "initial_model_state_cs2",
        "label": "Initial Model State CS2",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.initial_model_state_cs2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CS2`."
      },
      {
        "name": "initial_model_state_cs1",
        "label": "Initial Model State CS1",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.initial_model_state_cs1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CS1`."
      },
      {
        "name": "initial_model_state_cmt",
        "label": "Initial Model State Cmt",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.initial_model_state_cmt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CMT`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.species_labels"
      },
      {
        "name": "model_state_vm",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.model_state_vm"
      },
      {
        "name": "phi3",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.phi3"
      },
      {
        "name": "ns1",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.ns1"
      },
      {
        "name": "cs2",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.cs2"
      },
      {
        "name": "cs1",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.cs1"
      },
      {
        "name": "cmt",
        "maps_to": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.cmt"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Faville2008 Updepolarization Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_faville2008_updepolarization_model0912044015_model",
      "alias": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_faville2008_updepolarization_model0912044015_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_faville2008_updepolarization_model0912044015_model_state"
      ],
      "from": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_faville2008_updepolarization_model0912044015_model_summary"
      ],
      "from": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_faville2008_updepolarization_model0912044015_model_species_labels"
      ],
      "from": "systemsbiology_sbml_faville2008_updepolarization_model0912044015_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: A biophysically based mathematical model of unitary potential activity ininterstitial cells of Cajal. Faville RA, Pullan AJ, Sanders KM, Smith NP.",
  "schema_version": "2.0"
}

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