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Dubey2008 - Modeling the interaction between avascular cancerous cells and acquired immune response Lab

About lab

MODELING THE INTERACTION BETWEEN AVASCULAR CANCEROUS CELLS AND ACQUIRED IMMUNE RESPONSEB. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagedubey2008-modeling-the-interaction-between-avascular-cancerous-c
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_unresolved_tumor_observable_1",
        "label": "Initial Unresolved Tumor Observable 1",
        "units": "native source value",
        "default": 9,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.initial_unresolved_tumor_observable_1",
        "description": "Initial Unresolved Tumor Observable 1. Sets the initial value of bundled SBML species `T`."
      },
      {
        "name": "initial_unresolved_tumor_observable_2",
        "label": "Initial Unresolved Tumor Observable 2",
        "units": "native source value",
        "default": 7,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.initial_unresolved_tumor_observable_2",
        "description": "Initial Unresolved Tumor Observable 2. Sets the initial value of bundled SBML species `Th`."
      },
      {
        "name": "initial_unresolved_tumor_observable_3",
        "label": "Initial Unresolved Tumor Observable 3",
        "units": "native source value",
        "default": 1,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.initial_unresolved_tumor_observable_3",
        "description": "Initial Unresolved Tumor Observable 3. Sets the initial value of bundled SBML species `Tc`."
      },
      {
        "name": "initial_unresolved_tumor_observable_4",
        "label": "Initial Unresolved Tumor Observable 4",
        "units": "native source value",
        "default": 1,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.initial_unresolved_tumor_observable_4",
        "description": "Initial Unresolved Tumor Observable 4. Sets the initial value of bundled SBML species `B`."
      },
      {
        "name": "initial_unresolved_tumor_observable_5",
        "label": "Initial Unresolved Tumor Observable 5",
        "units": "native source value",
        "default": 1,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.initial_unresolved_tumor_observable_5",
        "description": "Initial Unresolved Tumor Observable 5. Sets the initial value of bundled SBML species `A`."
      },
      {
        "name": "introduction_of_antibody_against_cancer_rate",
        "label": "Introduction Of Antibody Against Cancer Rate",
        "units": "native source value",
        "default": 0.35,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.introduction_of_antibody_against_cancer_rate",
        "description": "Introduction Of Antibody Against Cancer Rate. Sets bundled SBML parameter `mu_4`."
      },
      {
        "name": "removal_of_antibody_from_the_system_rate",
        "label": "Removal Of Antibody From The System Rate",
        "units": "native source value",
        "default": 0.3,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.removal_of_antibody_from_the_system_rate",
        "description": "Removal Of Antibody From The System Rate. Sets bundled SBML parameter `mu_40`."
      },
      {
        "name": "removal_of_antibody_from_the_system_rate_2",
        "label": "Removal Of Antibody From The System Rate 2",
        "units": "native source value",
        "default": 0.5,
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.removal_of_antibody_from_the_system_rate_2",
        "description": "Removal Of Antibody From The System Rate 2. Sets bundled SBML parameter `delta_1`."
      }
    ],
    "outputs": [
      {
        "name": "unresolved_tumor_observable_1",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.unresolved_tumor_observable_1"
      },
      {
        "name": "unresolved_tumor_observable_2",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.unresolved_tumor_observable_2"
      },
      {
        "name": "unresolved_tumor_observable_3",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.unresolved_tumor_observable_3"
      },
      {
        "name": "unresolved_tumor_observable_4",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.unresolved_tumor_observable_4"
      },
      {
        "name": "unresolved_tumor_observable_5",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.unresolved_tumor_observable_5"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.species_labels"
      }
    ]
  },
  "title": "Dubey2008 - Modeling the interaction between avascular cancerous cells and acquired immune response Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model",
      "alias": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model_state"
      ],
      "from": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model_summary"
      ],
      "from": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model_species_labels"
      ],
      "from": "immunology_sbml_dubey2008_modeling_the_interaction_between_avasc_biomd0000000886_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "MODELING THE INTERACTION BETWEEN AVASCULAR CANCEROUS CELLS AND ACQUIRED IMMUNE RESPONSEB. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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