About lab
Clean Biosimulant lab for systems signaling model: Smith2009 - RGS mediated GTP hydrolysis. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesmith2009-rgs-mediated-gtp-hydrolysis-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ligand_conc_level",
"label": "Ligand Conc",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.initial_ligand_conc_level",
"description": "Ligand Conc source parameter. Maps to SBML symbol `Ligand_conc` and preserves the bundled default."
}
],
"outputs": [
{
"name": "source_defined_gabg_state",
"label": "source-defined GABG state",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.source_defined_gabg_state",
"description": "source-defined GABG state. Maps to SBML symbol `Gabg` and is emitted in native SBML units."
},
{
"name": "rgabg",
"label": "Rgabg",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.rgabg",
"description": "Rgabg. Maps to SBML symbol `RGabg` and is emitted in native SBML units."
},
{
"name": "rgabg_l",
"label": "Rgabg L",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.rgabg_l",
"description": "Rgabg L. Maps to SBML symbol `RGabgL` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr"
],
"title": "Smith2009 - RGS mediated GTP hydrolysis Lab",
"models": [
{
"path": "owned/models/signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model",
"alias": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model_state"
],
"from": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.state"
},
{
"to": [
"visualisation.signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model_summary"
],
"from": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model_species_labels"
],
"from": "signaling_sbml_smith2009_rgs_mediated_gtp_hydrolysis_biomd0000000439_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Smith2009 - RGS mediated GTP hydrolysis. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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