Martins2004 Yeast Glycolysis Glycerolsynthesis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose",
        "label": "Initial Glucose",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.initial_glucose",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GLCx`."
      },
      {
        "name": "initial_ethanol",
        "label": "Initial Ethanol",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.initial_ethanol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EtOH`."
      },
      {
        "name": "initial_glycerol",
        "label": "Initial Glycerol",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.initial_glycerol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GLY`."
      },
      {
        "name": "initial_fructose_1_6_bisphosphate",
        "label": "Initial Fructose 1 6 Bisphosphate",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.initial_fructose_1_6_bisphosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `F16bP`."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "label": "Initial Glucose 6 Phosphate",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.initial_glucose_6_phosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G6P`."
      },
      {
        "name": "initial_dihydroxyacetone_phosphate",
        "label": "Initial Dihydroxyacetone Phosphate",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.initial_dihydroxyacetone_phosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DHAP`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.species_labels"
      },
      {
        "name": "glucose",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.glucose"
      },
      {
        "name": "ethanol",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.ethanol"
      },
      {
        "name": "glycerol",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.glycerol"
      },
      {
        "name": "fructose_1_6_bisphosphate",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.fructose_1_6_bisphosphate"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.glucose_6_phosphate"
      },
      {
        "name": "dihydroxyacetone_phosphate",
        "maps_to": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.dihydroxyacetone_phosphate"
      }
    ]
  },
  "tags": [
    "metabolism",
    "microbiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Martins2004 Yeast Glycolysis Glycerolsynthesis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model",
      "alias": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model_state"
      ],
      "from": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model_summary"
      ],
      "from": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_martins2004_yeast_glycolysis_glycerolsynthesis_model1009220000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "A systems biology study of two distinct growth phases of Saccharomyces cerevisiae cultures AM Martins, D Camacho, J Shuman, W Sha, P Mendes, V Shulaev, Current Genomics 2004 5:649-663 This is a model. It can be used to explore systemsbiology martins2004 yeast glycolysis glycerolsynthesis model1009220000 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}