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Bagci2006 Apoptoticstimuli Lab

About lab

This a model from the article: Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeabilitytransition pores. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout GB, Bahar I.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebagci2006-apoptoticstimuli-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cytc_apaf_1",
        "label": "Initial Cytc Apaf 1",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_cytc_apaf_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CytcApaf_1`."
      },
      {
        "name": "initial_casp9_pro3",
        "label": "Initial Casp9 Pro3",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp9_pro3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9Pro3`."
      },
      {
        "name": "initial_casp9_iap",
        "label": "Initial Casp9 Iap",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp9_iap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9IAP`."
      },
      {
        "name": "initial_casp9",
        "label": "Initial Casp9",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp9",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp9`."
      },
      {
        "name": "initial_casp8_bid",
        "label": "Initial Casp8 Bid",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp8_bid",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp8Bid`."
      },
      {
        "name": "initial_casp8",
        "label": "Initial Casp8",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.initial_casp8",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Casp8`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.species_labels"
      },
      {
        "name": "cytc_apaf_1",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.cytc_apaf_1"
      },
      {
        "name": "casp9_pro3",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp9_pro3"
      },
      {
        "name": "casp9_iap",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp9_iap"
      },
      {
        "name": "casp9",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp9"
      },
      {
        "name": "casp8_bid",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp8_bid"
      },
      {
        "name": "casp8",
        "maps_to": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.casp8"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bagci2006 Apoptoticstimuli Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model",
      "alias": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model_state"
      ],
      "from": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model_summary"
      ],
      "from": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bagci2006_apoptoticstimuli_model1006230056_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeabilitytransition pores. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout GB, Bahar I.",
  "schema_version": "2.0"
}

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