Nazaret2008_Dynnik1980_CarbohydrateEnergyMetabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glyceraldehyde_3_phosphate",
        "units": "native SBML value",
        "default": 0.1,
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.initial_glyceraldehyde_3_phosphate",
        "description": "Initial condition for glyceraldehyde 3 phosphate. Maps to bundled SBML symbol `s1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_2",
        "units": "native SBML value",
        "default": 0.5,
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.initial_metabolic_pathway_state_2",
        "description": "Initial condition for metabolic pathway state 2. Maps to bundled SBML symbol `s2_e1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_observable_13dpg",
        "units": "native SBML value",
        "default": 0.5,
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.initial_observable_13dpg",
        "description": "Initial condition for observable 13dpg. Maps to bundled SBML symbol `s3_e2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pyruvate",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.initial_pyruvate",
        "description": "Initial condition for pyruvate. Maps to bundled SBML symbol `s4_e3`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_lactate",
        "units": "native SBML value",
        "default": 0.01,
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.initial_lactate",
        "description": "Initial condition for lactate. Maps to bundled SBML symbol `s5_e4`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glyceraldehyde_3_phosphate",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.glyceraldehyde_3_phosphate"
      },
      {
        "name": "metabolic_pathway_state_2",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.metabolic_pathway_state_2"
      },
      {
        "name": "observable_13dpg",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.observable_13dpg"
      },
      {
        "name": "pyruvate",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.pyruvate"
      },
      {
        "name": "lactate",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.lactate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.observable_labels"
      }
    ]
  },
  "title": "Nazaret2008_Dynnik1980_CarbohydrateEnergyMetabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model",
      "alias": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model",
      "parameters": {
        "model_path": "data/MODEL1202170000.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model_observable_values"
      ],
      "from": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model_run_summary"
      ],
      "from": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model_observable_labels"
      ],
      "from": "metabolism_sbml_nazaret2008_dynnik1980_carbohydrateenergymetabol_model1202170000_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This model is from the article: An old paper revisited: ‘‘A mathematical model of carbohydrate energy metabolism. Interaction between glycolysis, the Krebs cycle and the H-transporting shuttles at var.",
  "schema_version": "2.0"
}