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Aguda1999 - G2 DNA Damage Checkpoint Lab

About lab

Source-faithful physiology lab for Aguda, B, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageaguda1999-g2-dna-damage-checkpoint-lab
Created2026-05-15
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_a_cdc25_ps216",
        "label": "Initial A Cdc25 Ps216",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.initial_a_cdc25_ps216",
        "description": "Initial value for A Cdc25 Ps216. Maps to source symbol `aCdc25Ps216`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_chk1_p",
        "label": "Initial Chk1 P",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.initial_chk1_p",
        "description": "Initial value for Chk1 P. Maps to source symbol `Chk1P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.variable_labels"
      },
      {
        "name": "a_cdc25_ps216",
        "label": "A Cdc25 Ps216",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.a_cdc25_ps216",
        "description": "A Cdc25 Ps216. Maps to source symbol `aCdc25Ps216`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "chk1_p",
        "label": "Chk1 P",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.chk1_p",
        "description": "Chk1 P. Maps to source symbol `Chk1P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_cdc25_ps216",
        "label": "I Cdc25 Ps216",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.i_cdc25_ps216",
        "description": "I Cdc25 Ps216. Maps to source symbol `iCdc25Ps216`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_cdc25_ps216_protein1433",
        "label": "I Cdc25 Ps216 Protein1433",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.i_cdc25_ps216_protein1433",
        "description": "I Cdc25 Ps216 Protein1433. Maps to source symbol `iCdc25Ps216_protein1433`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "mpf",
        "label": "Mpf",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.mpf",
        "description": "Mpf. Maps to source symbol `MPF`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "p21",
        "label": "P21",
        "maps_to": "physiology_cellml_aguda_b_1999_35e_model.p21",
        "description": "P21. Maps to source symbol `p21`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Aguda1999 - G2 DNA Damage Checkpoint Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_aguda_b_1999_35e_model",
      "alias": "physiology_cellml_aguda_b_1999_35e_model",
      "parameters": {
        "model_path": "data/aguda_b_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_aguda_b_1999_35e_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_aguda_b_1999_35e_model_state"
      ],
      "from": "physiology_cellml_aguda_b_1999_35e_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_aguda_b_1999_35e_model_summary"
      ],
      "from": "physiology_cellml_aguda_b_1999_35e_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_aguda_b_1999_35e_model_trajectory"
      ],
      "from": "physiology_cellml_aguda_b_1999_35e_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_aguda_b_1999_35e_model_variable_labels"
      ],
      "from": "physiology_cellml_aguda_b_1999_35e_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Aguda, B, 1999. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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