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Bhartiya2003 Tryptophan Operon Lab

About lab

SBML level 2 code originaly generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. It can be used to explore systemsbiology bhartiya2003 tryptophan operon BioModels0000000062 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebhartiya2003-tryptophan-operon-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_exog_trp",
        "label": "Initial Exog Trp",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_exog_trp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `To`."
      },
      {
        "name": "initial_total_tryptophan",
        "label": "Initial Total Tryptophan",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_total_tryptophan",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Tt`."
      },
      {
        "name": "initial_synthesized_tryptophan",
        "label": "Initial Synthesized Tryptophan",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_synthesized_tryptophan",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ts`."
      },
      {
        "name": "initial_anthranilate_synthase",
        "label": "Initial Anthranilate Synthase",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_anthranilate_synthase",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Enz`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.species_labels"
      },
      {
        "name": "exog_trp",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.exog_trp"
      },
      {
        "name": "total_tryptophan",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.total_tryptophan"
      },
      {
        "name": "synthesized_tryptophan",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.synthesized_tryptophan"
      },
      {
        "name": "anthranilate_synthase",
        "maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.anthranilate_synthase"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bhartiya2003 Tryptophan Operon Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model",
      "alias": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model_state"
      ],
      "from": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model_summary"
      ],
      "from": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "SBML level 2 code originaly generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. It can be used to explore systemsbiology bhartiya2003 tryptophan operon BioModels0000000062 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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