About lab
SBML level 2 code originaly generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. It can be used to explore systemsbiology bhartiya2003 tryptophan operon BioModels0000000062 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhartiya2003-tryptophan-operon-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_exog_trp",
"label": "Initial Exog Trp",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_exog_trp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `To`."
},
{
"name": "initial_total_tryptophan",
"label": "Initial Total Tryptophan",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_total_tryptophan",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Tt`."
},
{
"name": "initial_synthesized_tryptophan",
"label": "Initial Synthesized Tryptophan",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_synthesized_tryptophan",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ts`."
},
{
"name": "initial_anthranilate_synthase",
"label": "Initial Anthranilate Synthase",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.initial_anthranilate_synthase",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Enz`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.species_labels"
},
{
"name": "exog_trp",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.exog_trp"
},
{
"name": "total_tryptophan",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.total_tryptophan"
},
{
"name": "synthesized_tryptophan",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.synthesized_tryptophan"
},
{
"name": "anthranilate_synthase",
"maps_to": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.anthranilate_synthase"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bhartiya2003 Tryptophan Operon Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model",
"alias": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model_state"
],
"from": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model_summary"
],
"from": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model_species_labels"
],
"from": "systemsbiology_sbml_bhartiya2003_tryptophan_operon_biomd0000000062_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "SBML level 2 code originaly generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. It can be used to explore systemsbiology bhartiya2003 tryptophan operon BioModels0000000062 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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