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Paci2013 - Computational Ventricular Atrial Like Human Induced Lab

About lab

Source-faithful physiology lab for paci_hyttinen_aaltosetala_severi_2013. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagepaci2013-computational-ventricular-atrial-like-human-induced-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `Vm`. Units: volt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "volt"
        ]
      },
      {
        "name": "initial_ca_sr",
        "label": "Initial Ca Sr",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.initial_ca_sr",
        "description": "Initial value for Ca Sr. Maps to source symbol `Ca_SR`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `Vm`. Units: volt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_sr",
        "label": "Ca Sr",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.ca_sr",
        "description": "Ca Sr. Maps to source symbol `Ca_SR`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_d_gate",
        "label": "Calcium D Gate",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.calcium_d_gate",
        "description": "Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_dynamics_g",
        "label": "Calcium Dynamics G",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.calcium_dynamics_g",
        "description": "Calcium Dynamics G. Maps to source symbol `g`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Cai`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_sodium",
        "label": "Intracellular Sodium",
        "maps_to": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.intracellular_sodium",
        "description": "Intracellular Sodium. Maps to source symbol `Nai`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Paci2013 - Computational Ventricular Atrial Like Human Induced Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model",
      "alias": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model",
      "parameters": {
        "model_path": "data/paci_hyttinen_aaltosetala_severi_atrialVersion.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model_state"
      ],
      "from": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model_summary"
      ],
      "from": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model_trajectory"
      ],
      "from": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model_variable_labels"
      ],
      "from": "physiology_cellml_paci_hyttinen_aaltosetala_severi_2013_593_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for paci_hyttinen_aaltosetala_severi_2013. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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