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Tan2012 - Antibiotic Treatment, Inoculum Effect Lab

About lab

Curated microbiology lab for Tan2012 - Antibiotic Treatment, Inoculum Effect. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packagetan2012-antibiotic-treatment-inoculum-effect-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "antibiotic_killing_rate",
        "maps_to": "tan2012_antibiotic_inoculum_effect.antibiotic_killing_rate"
      },
      {
        "name": "initial_ribosome_concentration",
        "maps_to": "tan2012_antibiotic_inoculum_effect.initial_ribosome_concentration"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "tan2012_antibiotic_inoculum_effect.state"
      },
      {
        "name": "summary",
        "maps_to": "tan2012_antibiotic_inoculum_effect.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "tan2012_antibiotic_inoculum_effect.species_labels"
      },
      {
        "name": "ribosome_concentration",
        "maps_to": "tan2012_antibiotic_inoculum_effect.ribosome_concentration"
      }
    ]
  },
  "title": "Tan2012 - Antibiotic Treatment, Inoculum Effect Lab",
  "models": [
    {
      "path": "owned/models/tan2012_antibiotic_inoculum_effect",
      "alias": "tan2012_antibiotic_inoculum_effect",
      "provenance": {
        "owned_path": "owned/models/tan2012_antibiotic_inoculum_effect"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.tan2012_antibiotic_inoculum_effect_state"
      ],
      "from": "tan2012_antibiotic_inoculum_effect.state"
    },
    {
      "to": [
        "visualisation.tan2012_antibiotic_inoculum_effect_summary"
      ],
      "from": "tan2012_antibiotic_inoculum_effect.summary"
    },
    {
      "to": [
        "visualisation.tan2012_antibiotic_inoculum_effect_species_labels"
      ],
      "from": "tan2012_antibiotic_inoculum_effect.species_labels"
    },
    {
      "to": [
        "visualisation.tan2012_antibiotic_inoculum_effect_ribosome_concentration"
      ],
      "from": "tan2012_antibiotic_inoculum_effect.ribosome_concentration"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Tan2012 - Antibiotic Treatment, Inoculum Effect. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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