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Shaw2019 - Digital biosensor model from Yeast Lab

About lab

Curated microbiology lab for Shaw2019 - Digital biosensor model from Yeast. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packageshaw2019-digital-biosensor-model-from-yeast-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "ligand_level",
        "maps_to": "shaw2019_yeast_digital_biosensor.ligand_level"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "shaw2019_yeast_digital_biosensor.state"
      },
      {
        "name": "summary",
        "maps_to": "shaw2019_yeast_digital_biosensor.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "shaw2019_yeast_digital_biosensor.species_labels"
      },
      {
        "name": "receptor_state_1",
        "maps_to": "shaw2019_yeast_digital_biosensor.receptor_state_1"
      },
      {
        "name": "active_receptor_state_1",
        "maps_to": "shaw2019_yeast_digital_biosensor.active_receptor_state_1"
      },
      {
        "name": "inactive_gprotein_state_1",
        "maps_to": "shaw2019_yeast_digital_biosensor.inactive_gprotein_state_1"
      },
      {
        "name": "active_gprotein_state_1",
        "maps_to": "shaw2019_yeast_digital_biosensor.active_gprotein_state_1"
      }
    ]
  },
  "title": "Shaw2019 - Digital biosensor model from Yeast Lab",
  "models": [
    {
      "path": "owned/models/shaw2019_yeast_digital_biosensor",
      "alias": "shaw2019_yeast_digital_biosensor",
      "provenance": {
        "owned_path": "owned/models/shaw2019_yeast_digital_biosensor"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_state"
      ],
      "from": "shaw2019_yeast_digital_biosensor.state"
    },
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_summary"
      ],
      "from": "shaw2019_yeast_digital_biosensor.summary"
    },
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_species_labels"
      ],
      "from": "shaw2019_yeast_digital_biosensor.species_labels"
    },
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_receptor_state_1"
      ],
      "from": "shaw2019_yeast_digital_biosensor.receptor_state_1"
    },
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_active_receptor_state_1"
      ],
      "from": "shaw2019_yeast_digital_biosensor.active_receptor_state_1"
    },
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_inactive_gprotein_state_1"
      ],
      "from": "shaw2019_yeast_digital_biosensor.inactive_gprotein_state_1"
    },
    {
      "to": [
        "visualisation.shaw2019_yeast_digital_biosensor_active_gprotein_state_1"
      ],
      "from": "shaw2019_yeast_digital_biosensor.active_gprotein_state_1"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Shaw2019 - Digital biosensor model from Yeast. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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