BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Novak1993 - Numerical Analysis Comprehensive M Phase Control Xenopus Lab

About lab

Source-faithful physiology lab for Novak, Tyson, 1993. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagenovak1993-numerical-analysis-comprehensive-m-phase-control-xenop
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cdc25_p",
        "label": "Initial Cdc25 P",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.initial_cdc25_p",
        "description": "Initial value for Cdc25 P. Maps to source symbol `Cdc25_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cyclin",
        "label": "Initial Cyclin",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.initial_cyclin",
        "description": "Initial value for Cyclin. Maps to source symbol `cyclin`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.variable_labels"
      },
      {
        "name": "cdc25_p",
        "label": "Cdc25 P",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.cdc25_p",
        "description": "Cdc25 P. Maps to source symbol `Cdc25_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cyclin",
        "label": "Cyclin",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.cyclin",
        "description": "Cyclin. Maps to source symbol `cyclin`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cyclin_cdc2",
        "label": "Cyclin Cdc2",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.cyclin_cdc2",
        "description": "Cyclin Cdc2. Maps to source symbol `cyclin_Cdc2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ie_p",
        "label": "Ie P",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.ie_p",
        "description": "Ie P. Maps to source symbol `IE_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "mpf_active",
        "label": "Mpf Active",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.mpf_active",
        "description": "Mpf Active. Maps to source symbol `MPF_active`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "mpf_pre",
        "label": "Mpf Pre",
        "maps_to": "physiology_cellml_novak_tyson_1993_314_model.mpf_pre",
        "description": "Mpf Pre. Maps to source symbol `MPF_pre`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Novak1993 - Numerical Analysis Comprehensive M Phase Control Xenopus Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_novak_tyson_1993_314_model",
      "alias": "physiology_cellml_novak_tyson_1993_314_model",
      "parameters": {
        "model_path": "data/novak_tyson_1993_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_novak_tyson_1993_314_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1993_314_model_state"
      ],
      "from": "physiology_cellml_novak_tyson_1993_314_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1993_314_model_summary"
      ],
      "from": "physiology_cellml_novak_tyson_1993_314_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1993_314_model_trajectory"
      ],
      "from": "physiology_cellml_novak_tyson_1993_314_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_tyson_1993_314_model_variable_labels"
      ],
      "from": "physiology_cellml_novak_tyson_1993_314_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Novak, Tyson, 1993. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.