About lab
Originally created by libAntimony v1.4 (using libSBML 3.4.1) This is an SBML implementation the model of negative feedback oscillator (figure 2a) described in the article: Sniffers, buzzers, toggles a. It can be used to explore systemsbiology tyson2003 negfb oscillator BioModels0000000308 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetyson2003-negfb-oscillator-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_yp",
"label": "Initial Model State Yp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_yp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Yp`."
},
{
"name": "initial_model_state_rp",
"label": "Initial Model State Rp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_rp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rp`."
},
{
"name": "initial_model_state_y",
"label": "Initial Model State Y",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_y",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
},
{
"name": "initial_model_state_x",
"label": "Initial Model State X",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_x",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
},
{
"name": "initial_model_state_s",
"label": "Initial Model State S",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_s",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S`."
},
{
"name": "initial_model_state_r",
"label": "Initial Model State R",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_r",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.species_labels"
},
{
"name": "model_state_yp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_yp"
},
{
"name": "model_state_rp",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_rp"
},
{
"name": "model_state_y",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_y"
},
{
"name": "model_state_x",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_x"
},
{
"name": "model_state_s",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_s"
},
{
"name": "model_state_r",
"maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_r"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Tyson2003 Negfb Oscillator Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model",
"alias": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_state"
],
"from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_summary"
],
"from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_species_labels"
],
"from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Originally created by libAntimony v1.4 (using libSBML 3.4.1) This is an SBML implementation the model of negative feedback oscillator (figure 2a) described in the article: Sniffers, buzzers, toggles a. It can be used to explore systemsbiology tyson2003 negfb oscillator BioModels0000000308 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.