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Tyson2003 Negfb Oscillator Lab

About lab

Originally created by libAntimony v1.4 (using libSBML 3.4.1) This is an SBML implementation the model of negative feedback oscillator (figure 2a) described in the article: Sniffers, buzzers, toggles a. It can be used to explore systemsbiology tyson2003 negfb oscillator BioModels0000000308 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagetyson2003-negfb-oscillator-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_yp",
        "label": "Initial Model State Yp",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_yp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Yp`."
      },
      {
        "name": "initial_model_state_rp",
        "label": "Initial Model State Rp",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_rp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rp`."
      },
      {
        "name": "initial_model_state_y",
        "label": "Initial Model State Y",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_y",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
      },
      {
        "name": "initial_model_state_x",
        "label": "Initial Model State X",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_x",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
      },
      {
        "name": "initial_model_state_s",
        "label": "Initial Model State S",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_s",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S`."
      },
      {
        "name": "initial_model_state_r",
        "label": "Initial Model State R",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.initial_model_state_r",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.species_labels"
      },
      {
        "name": "model_state_yp",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_yp"
      },
      {
        "name": "model_state_rp",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_rp"
      },
      {
        "name": "model_state_y",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_y"
      },
      {
        "name": "model_state_x",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_x"
      },
      {
        "name": "model_state_s",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_s"
      },
      {
        "name": "model_state_r",
        "maps_to": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.model_state_r"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Tyson2003 Negfb Oscillator Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model",
      "alias": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_state"
      ],
      "from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_summary"
      ],
      "from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model_species_labels"
      ],
      "from": "systemsbiology_sbml_tyson2003_negfb_oscillator_biomd0000000308_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Originally created by libAntimony v1.4 (using libSBML 3.4.1) This is an SBML implementation the model of negative feedback oscillator (figure 2a) described in the article: Sniffers, buzzers, toggles a. It can be used to explore systemsbiology tyson2003 negfb oscillator BioModels0000000308 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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