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Corrias2007 - Buist Quantitative Gastric Smooth Muscle Cellular Lab

About lab

Source-faithful physiology lab for Corrias, Buist, 2007. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagecorrias2007-buist-quantitative-gastric-smooth-muscle-cellular-la
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_intracellular_calcium",
        "label": "Initial Intracellular Calcium",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.initial_intracellular_calcium",
        "description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_vm_sm",
        "label": "Initial Vm Sm",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.initial_vm_sm",
        "description": "Initial value for Vm Sm. Maps to source symbol `Vm_SM`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "voltage_units"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.variable_labels"
      },
      {
        "name": "intracellular_sodium",
        "label": "Intracellular Sodium",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.intracellular_sodium",
        "description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `K_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `I_Na_SM`. Units: current_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "vm_sm",
        "label": "Vm Sm",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.vm_sm",
        "description": "Vm Sm. Maps to source symbol `Vm_SM`. Units: voltage_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cm_sm",
        "label": "Cm Sm",
        "maps_to": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.cm_sm",
        "description": "Cm Sm. Maps to source symbol `Cm_SM`. Units: capacitance_units. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Corrias2007 - Buist Quantitative Gastric Smooth Muscle Cellular Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_corrias_buist_2007_corriasbuist2007_model",
      "alias": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model",
      "parameters": {
        "model_path": "data/corrias_buist_2007.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_corrias_buist_2007_corriasbuist2007_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_corrias_buist_2007_corriasbuist2007_model_state"
      ],
      "from": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_corrias_buist_2007_corriasbuist2007_model_summary"
      ],
      "from": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_corrias_buist_2007_corriasbuist2007_model_trajectory"
      ],
      "from": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_corrias_buist_2007_corriasbuist2007_model_variable_labels"
      ],
      "from": "physiology_cellml_corrias_buist_2007_corriasbuist2007_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Corrias, Buist, 2007. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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