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Linke2017 Cyclin Expression Lab

About lab

yeast cyclin B2/B3 expression. Modeling of the expression of cyclin B2 and B3 in the budding yeast cell cycle. It can be used to explore generegulation linke2017 synchronization of cyclins expression dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagelinke2017-cyclin-expression-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "sic1",
        "maps_to": "linke2017_cyclin_expression.sic1"
      },
      {
        "name": "cdk1_clb5_or_clb6",
        "maps_to": "linke2017_cyclin_expression.cdk1_clb5_or_clb6"
      },
      {
        "name": "cdk1_clb3_or_clb4",
        "maps_to": "linke2017_cyclin_expression.cdk1_clb3_or_clb4"
      },
      {
        "name": "cdk1_clb1_or_clb2",
        "maps_to": "linke2017_cyclin_expression.cdk1_clb1_or_clb2"
      },
      {
        "name": "state",
        "maps_to": "linke2017_cyclin_expression.state"
      },
      {
        "name": "summary",
        "maps_to": "linke2017_cyclin_expression.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "linke2017_cyclin_expression.species_labels"
      }
    ]
  },
  "title": "Linke2017 Cyclin Expression Lab",
  "models": [
    {
      "path": "owned/models/linke2017_cyclin_expression",
      "alias": "linke2017_cyclin_expression",
      "parameters": {
        "model_path": "data/BIOMD0000000934.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/linke2017_cyclin_expression"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_sic1"
      ],
      "from": "linke2017_cyclin_expression.sic1"
    },
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_cdk1_clb5_or_clb6"
      ],
      "from": "linke2017_cyclin_expression.cdk1_clb5_or_clb6"
    },
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_cdk1_clb3_or_clb4"
      ],
      "from": "linke2017_cyclin_expression.cdk1_clb3_or_clb4"
    },
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_cdk1_clb1_or_clb2"
      ],
      "from": "linke2017_cyclin_expression.cdk1_clb1_or_clb2"
    },
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_state"
      ],
      "from": "linke2017_cyclin_expression.state"
    },
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_summary"
      ],
      "from": "linke2017_cyclin_expression.summary"
    },
    {
      "to": [
        "visualisation.linke2017_cyclin_expression_species_labels"
      ],
      "from": "linke2017_cyclin_expression.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "yeast cyclin B2/B3 expression. Modeling of the expression of cyclin B2 and B3 in the budding yeast cell cycle. It can be used to explore generegulation linke2017 synchronization of cyclins expression dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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