About lab
Clean Biosimulant lab for systems signaling model: Koch2005 - Sucrose breakdown pathway - Petri net. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekoch2005-sucrose-breakdown-pathway-petri-net-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_sucrose",
"label": "Initial sucrose",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.initial_sucrose",
"description": "Initial level of sucrose. Maps to SBML symbol `P0`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "sucrose",
"label": "sucrose",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.sucrose",
"description": "sucrose. Maps to SBML symbol `P0` and is emitted in native SBML units."
},
{
"name": "source_defined_esuc_state",
"label": "source-defined ESUC state",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.source_defined_esuc_state",
"description": "source-defined ESUC state. Maps to SBML symbol `P1` and is emitted in native SBML units."
},
{
"name": "glucose",
"label": "glucose",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.glucose",
"description": "glucose. Maps to SBML symbol `P2` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Koch2005 - Sucrose breakdown pathway - Petri net Lab",
"models": [
{
"path": "owned/models/signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model",
"alias": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model_state"
],
"from": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.state"
},
{
"to": [
"visualisation.signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model_summary"
],
"from": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model_species_labels"
],
"from": "signaling_sbml_koch2005_sucrose_breakdown_pathway_petri_net_model1308080002_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Koch2005 - Sucrose breakdown pathway - Petri net. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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