About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageheberle-razquin-navas-2019-pi3k-mapk-p38-mtor-mo
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkpi3k-aktmtorstress-responsevisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_akt_p_s473_obs",
"label": "Initial AKT P S473 Obs",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.initial_akt_p_s473_obs",
"description": "Initial level of AKT P S473 Obs. Maps to SBML symbol `Akt_pS473_obs`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_akt_p_t308_obs",
"label": "Initial AKT P T308 Obs",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.initial_akt_p_t308_obs",
"description": "Initial level of AKT P T308 Obs. Maps to SBML symbol `Akt_pT308_obs`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_four_ebp1_p_t37_46_obs",
"label": "Initial Four EBP1 P T37 46 Obs",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.initial_four_ebp1_p_t37_46_obs",
"description": "Initial level of Four EBP1 P T37 46 Obs. Maps to SBML symbol `fourEBP1_pT37_46_obs`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "akt_p_t308_obs",
"label": "AKT P T308 Obs",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.akt_p_t308_obs",
"description": "AKT P T308 Obs. Maps to SBML symbol `Akt_pT308_obs` and is emitted in native SBML units."
},
{
"name": "akt_p_s473_obs",
"label": "AKT P S473 Obs",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.akt_p_s473_obs",
"description": "AKT P S473 Obs. Maps to SBML symbol `Akt_pS473_obs` and is emitted in native SBML units."
},
{
"name": "pras40_p_t246_obs",
"label": "PRAS40 P T246 Obs",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.pras40_p_t246_obs",
"description": "PRAS40 P T246 Obs. Maps to SBML symbol `PRAS40_pT246_obs` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"pi3k-akt",
"mtor",
"stress-response"
],
"title": "Heberle-Razquin Navas-2019 - PI3K-MAPK/p38-mTOR Model V Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model_state"
],
"from": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.state"
},
{
"to": [
"visualisation.signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model_summary"
],
"from": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model_species_labels"
],
"from": "signaling_sbml_heberle_razquin_navas_2019_pi3k_mapk_p38_mtor_mo_model1902140002_model.species_labels"
}
],
"package": "heberle-razquin-navas-2019-pi3k-mapk-p38-mtor-mo",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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