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Vilar2006 - Signal Processing Tgf Beta Superfamily Ligand Receptor Lab

About lab

Source-faithful physiology lab for Vilar 2006. Public controls and outputs are mapped to real source symbols for signalling physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagevilar2006-signal-processing-tgf-beta-superfamily-ligand-receptor
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_type_i_receptor_ri",
        "label": "Initial Type I Receptor Ri (source RI)",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.initial_type_i_receptor_ri",
        "description": "Initial value for Type I Receptor Ri (source RI). Maps to source symbol `RI`. Units: dimensionless. Naming evidence: TGF-beta receptor context supports a conservative type-I receptor label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_l_ri_rii",
        "label": "Initial L Ri Rii",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.initial_l_ri_rii",
        "description": "Initial value for L Ri Rii. Maps to source symbol `l_RI_RII`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.variable_labels"
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `ki`. Units: per_minute. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "type_i_receptor_ri",
        "label": "Type I Receptor Ri (source RI)",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.type_i_receptor_ri",
        "description": "Type I Receptor Ri (source RI). Maps to source symbol `RI`. Units: dimensionless. Naming evidence: TGF-beta receptor context supports a conservative type-I receptor label."
      },
      {
        "name": "l_ri_rii",
        "label": "L Ri Rii",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.l_ri_rii",
        "description": "L Ri Rii. Maps to source symbol `l_RI_RII`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "l_ri_rii_endo",
        "label": "L Ri Rii Endo",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.l_ri_rii_endo",
        "description": "L Ri Rii Endo. Maps to source symbol `l_RI_RII_endo`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ri_endo",
        "label": "Ri Endo",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.ri_endo",
        "description": "Ri Endo. Maps to source symbol `RI_endo`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rii",
        "label": "Rii",
        "maps_to": "physiology_cellml_vilar_2006_vilar2006_model.rii",
        "description": "Rii. Maps to source symbol `RII`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Vilar2006 - Signal Processing Tgf Beta Superfamily Ligand Receptor Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_vilar_2006_vilar2006_model",
      "alias": "physiology_cellml_vilar_2006_vilar2006_model",
      "parameters": {
        "model_path": "data/vilar_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_vilar_2006_vilar2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_vilar_2006_vilar2006_model_state"
      ],
      "from": "physiology_cellml_vilar_2006_vilar2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vilar_2006_vilar2006_model_summary"
      ],
      "from": "physiology_cellml_vilar_2006_vilar2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vilar_2006_vilar2006_model_trajectory"
      ],
      "from": "physiology_cellml_vilar_2006_vilar2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vilar_2006_vilar2006_model_variable_labels"
      ],
      "from": "physiology_cellml_vilar_2006_vilar2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Vilar 2006. Public controls and outputs are mapped to real source symbols for signalling physiology.",
  "schema_version": "2.0"
}

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