About lab
This a model from the article: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekuhn2009-endomesodermnetwork
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_mrna_p_vegfr",
"label": "Initial MRNA P Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_mrna_p_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mRNA_P_VEGFR`."
},
{
"name": "initial_mrna_m_vegfr",
"label": "Initial MRNA M Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_mrna_m_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mRNA_M_VEGFR`."
},
{
"name": "initial_mrna_e_vegfr",
"label": "Initial MRNA E Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_mrna_e_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mRNA_E_VEGFR`."
},
{
"name": "initial_protein_p_vegf_signal",
"label": "Initial Protein P Vegf Signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_protein_p_vegf_signal",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PROTEIN_P_VEGFSignal`."
},
{
"name": "initial_protein_p_vegfr",
"label": "Initial Protein P Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_protein_p_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PROTEIN_P_VEGFR`."
},
{
"name": "initial_protein_m_vegf_signal",
"label": "Initial Protein M Vegf Signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_protein_m_vegf_signal",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PROTEIN_M_VEGFSignal`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.species_labels"
},
{
"name": "mrna_p_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.mrna_p_vegfr"
},
{
"name": "mrna_m_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.mrna_m_vegfr"
},
{
"name": "mrna_e_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.mrna_e_vegfr"
},
{
"name": "protein_p_vegf_signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.protein_p_vegf_signal"
},
{
"name": "protein_p_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.protein_p_vegfr"
},
{
"name": "protein_m_vegf_signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.protein_m_vegf_signal"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Kuhn2009 Endomesodermnetwork Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model_state"
],
"from": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model_summary"
],
"from": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model_species_labels"
],
"from": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.species_labels"
}
],
"package": "kuhn2009-endomesodermnetwork",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.