About lab
Clean Biosimulant lab for systems signaling model: PanRTK model for single cell line. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepanrtk-model-for-single-cell-line-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_akt_activation_p_egfr_level",
"label": "AKT Activation P EGFR",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.initial_akt_activation_p_egfr_level",
"description": "AKT Activation P EGFR source parameter. Maps to SBML symbol `AKT_activation_pEGFR` and preserves the bundled default."
},
{
"name": "initial_akt_activation_p_met_egfr_level",
"label": "AKT Activation P Met EGFR",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.initial_akt_activation_p_met_egfr_level",
"description": "AKT Activation P Met EGFR source parameter. Maps to SBML symbol `AKT_activation_pMetEGFR` and preserves the bundled default."
},
{
"name": "initial_egf_k_d_level",
"label": "EGF K D",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.initial_egf_k_d_level",
"description": "EGF K D source parameter. Maps to SBML symbol `EGF_kD` and preserves the bundled default."
}
],
"outputs": [
{
"name": "erk",
"label": "ERK",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.erk",
"description": "ERK. Maps to SBML symbol `ERK` and is emitted in native SBML units."
},
{
"name": "perk_kinase",
"label": "PERK kinase",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.perk_kinase",
"description": "PERK kinase. Maps to SBML symbol `pERK` and is emitted in native SBML units."
},
{
"name": "akt",
"label": "AKT",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.akt",
"description": "AKT. Maps to SBML symbol `AKT` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr"
],
"title": "PanRTK model for single cell line Lab",
"models": [
{
"path": "owned/models/signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model",
"alias": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model_state"
],
"from": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.state"
},
{
"to": [
"visualisation.signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model_summary"
],
"from": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model_species_labels"
],
"from": "signaling_sbml_panrtk_model_for_single_cell_line_model1708210000_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: PanRTK model for single cell line. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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