Physiome af2 - Physics Example 6 Enzyme Catalyzed Reaction Michaelis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_q_1",
        "label": "Initial Model State Q 1 (source q_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.initial_model_state_q_1",
        "description": "Initial value for Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "mole"
        ]
      },
      {
        "name": "initial_model_state_q_2",
        "label": "Initial Model State Q 2 (source q_2)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.initial_model_state_q_2",
        "description": "Initial value for Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "mole"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.variable_labels"
      },
      {
        "name": "model_state_q_1",
        "label": "Model State Q 1 (source q_1)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.model_state_q_1",
        "description": "Model State Q 1 (source q_1). Maps to source symbol `q_1`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_2",
        "label": "Model State Q 2 (source q_2)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.model_state_q_2",
        "description": "Model State Q 2 (source q_2). Maps to source symbol `q_2`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_3",
        "label": "Model State Q 3 (source q_3)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.model_state_q_3",
        "description": "Model State Q 3 (source q_3). Maps to source symbol `q_3`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_q_4",
        "label": "Model State Q 4 (source q_4)",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.model_state_q_4",
        "description": "Model State Q 4 (source q_4). Maps to source symbol `q_4`. Units: mole. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "kappa_1",
        "label": "Kappa 1",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.kappa_1",
        "description": "Kappa 1. Maps to source symbol `kappa_1`. Units: mol_per_s. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kappa_2",
        "label": "Kappa 2",
        "maps_to": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.kappa_2",
        "description": "Kappa 2. Maps to source symbol `kappa_2`. Units: mol_per_s. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome af2 - Physics Example 6 Enzyme Catalyzed Reaction Michaelis Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model",
      "alias": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model",
      "parameters": {
        "model_path": "data/FAIRDO_BG_example_3.6.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model_state"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model_summary"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model_trajectory"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model_variable_labels"
      ],
      "from": "physiology_cellml_the_physics_of_physiology_example_6_an_enzyme_ca_af2_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for The Physics of Physiology - Example 6: An enzyme-catalyzed reaction and Michaelis-Menten kinetics. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}