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Sachse2008 Fibroblastinteractingmyocytes Lab

About lab

This a model from the article: Electrophysiological modeling of fibroblasts and their interaction with myocytes. It can be used to explore systemsbiology sachse2008 fibroblastinteractingmyo model7914759868 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesachse2008-fibroblastinteractingmyocytes-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_vm_real",
        "label": "Initial Vm Real",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.initial_vm_real",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `VmReal`."
      },
      {
        "name": "initial_v_membrane",
        "label": "Initial V Membrane",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.initial_v_membrane",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_membrane`."
      },
      {
        "name": "initial_s_ss",
        "label": "Initial S Ss",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.initial_s_ss",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s_ss`."
      },
      {
        "name": "initial_s_slow",
        "label": "Initial S Slow",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.initial_s_slow",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s_slow`."
      },
      {
        "name": "initial_r_ss",
        "label": "Initial R Ss",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.initial_r_ss",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `r_ss`."
      },
      {
        "name": "initial_p_o2",
        "label": "Initial P O2",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.initial_p_o2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P_O2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.species_labels"
      },
      {
        "name": "vm_real",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.vm_real"
      },
      {
        "name": "v_membrane",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.v_membrane"
      },
      {
        "name": "s_ss",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.s_ss"
      },
      {
        "name": "s_slow",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.s_slow"
      },
      {
        "name": "r_ss",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.r_ss"
      },
      {
        "name": "p_o2",
        "maps_to": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.p_o2"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Sachse2008 Fibroblastinteractingmyocytes Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model",
      "alias": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model_state"
      ],
      "from": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model_summary"
      ],
      "from": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model_species_labels"
      ],
      "from": "systemsbiology_sbml_sachse2008_fibroblastinteractingmyocytes_model7914759868_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Electrophysiological modeling of fibroblasts and their interaction with myocytes. It can be used to explore systemsbiology sachse2008 fibroblastinteractingmyo model7914759868 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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