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Murphy2016 - Differences in predictions of ODE models of tumor growth Lab

About lab

Murphy2016 - Differences in predictions ofODE models of tumor growth Comparison of 7 ODE models for tumoursize. This models have been compared to experimental data.

Runtime

Duration10
Comms Step1

Runs

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Metadata

Packagemurphy2016-differences-in-predictions-of-ode-models-of-tumor-gro
Created2026-05-16
Updated2026-05-16
biomodels_ebicuratedfaithfuloncologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_exponential_tumor_volume",
        "label": "Exponential Tumor Volume",
        "units": "native SBML value",
        "default": 220,
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.initial_exponential_tumor_volume",
        "description": "Initial Exponential Tumor Volume. Sets the initial value of bundled SBML symbol `V_exp`."
      },
      {
        "name": "initial_logistic_tumor_volume",
        "label": "Logistic Tumor Volume",
        "units": "native SBML value",
        "default": 220,
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.initial_logistic_tumor_volume",
        "description": "Initial Logistic Tumor Volume. Sets the initial value of bundled SBML symbol `V_log`."
      },
      {
        "name": "initial_gompertz_tumor_volume",
        "label": "Gompertz Tumor Volume",
        "units": "native SBML value",
        "default": 220,
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.initial_gompertz_tumor_volume",
        "description": "Initial Gompertz Tumor Volume. Sets the initial value of bundled SBML symbol `V_gomp`."
      }
    ],
    "outputs": [
      {
        "name": "v_exp",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_exp",
        "description": "V exp observable. Maps to SBML symbol `V_exp`."
      },
      {
        "name": "v_mend",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_mend",
        "description": "V mend observable. Maps to SBML symbol `V_mend`."
      },
      {
        "name": "v_log",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_log",
        "description": "V log observable. Maps to SBML symbol `V_log`."
      },
      {
        "name": "v_lin",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_lin",
        "description": "V lin observable. Maps to SBML symbol `V_lin`."
      },
      {
        "name": "v_surf",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_surf",
        "description": "V surf observable. Maps to SBML symbol `V_surf`."
      },
      {
        "name": "v_gomp",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.v_gomp",
        "description": "V gomp observable. Maps to SBML symbol `V_gomp`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "biomodels_ebi",
    "curated",
    "faithful",
    "oncology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "Murphy2016 - Differences in predictions of ODE models of tumor growth Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model",
      "alias": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model_state"
      ],
      "from": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model_summary"
      ],
      "from": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model_species_labels"
      ],
      "from": "oncology_sbml_murphy2016_differences_in_predictions_of_ode_mod_biomd0000000671_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Murphy2016 - Differences in predictions ofODE models of tumor growth Comparison of 7 ODE models for tumoursize. This models have been compared to experimental data.",
  "schema_version": "2.0"
}

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