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Sarai2003 Cardiacsanodepacemaker Lab

About lab

This a model from the article: Role of individual ionic current systems in the SA node hypothesized by a modelstudy. Sarai N, Matsuoka S, Kuratomi S, Ono K, Noma A.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesarai2003-cardiacsanodepacemaker-lab
Created2026-05-17
Updated2026-05-17
cardiovascularsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_at_pi",
        "label": "Initial At Pi",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_at_pi",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATPi`."
      },
      {
        "name": "initial_ca_total_internal_ion_concentrations",
        "label": "Initial Ca Total Internal Ion Concentrations",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_ca_total_internal_ion_concentrations",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Total_internal_ion_concentrations`."
      },
      {
        "name": "initial_y3_st_channel_y3_gate",
        "label": "Initial Y3 St Channel Y3 Gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y3_st_channel_y3_gate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y3_st_channel_y3_gate`."
      },
      {
        "name": "initial_y2_st_channel_y2_gate",
        "label": "Initial Y2 St Channel Y2 Gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y2_st_channel_y2_gate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y2_st_channel_y2_gate`."
      },
      {
        "name": "initial_y1_st_channel_y1_gate",
        "label": "Initial Y1 St Channel Y1 Gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y1_st_channel_y1_gate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y1_st_channel_y1_gate`."
      },
      {
        "name": "initial_y_sr_calcium_pump_y_gate",
        "label": "Initial Y Sr Calcium Pump Y Gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y_sr_calcium_pump_y_gate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y_SR_calcium_pump_y_gate`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.species_labels"
      },
      {
        "name": "at_pi",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.at_pi"
      },
      {
        "name": "ca_total_internal_ion_concentrations",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.ca_total_internal_ion_concentrations"
      },
      {
        "name": "y3_st_channel_y3_gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y3_st_channel_y3_gate"
      },
      {
        "name": "y2_st_channel_y2_gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y2_st_channel_y2_gate"
      },
      {
        "name": "y1_st_channel_y1_gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y1_st_channel_y1_gate"
      },
      {
        "name": "y_sr_calcium_pump_y_gate",
        "maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y_sr_calcium_pump_y_gate"
      }
    ]
  },
  "tags": [
    "cardiovascular",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Sarai2003 Cardiacsanodepacemaker Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model",
      "alias": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_state"
      ],
      "from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_summary"
      ],
      "from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_species_labels"
      ],
      "from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Role of individual ionic current systems in the SA node hypothesized by a modelstudy. Sarai N, Matsuoka S, Kuratomi S, Ono K, Noma A.",
  "schema_version": "2.0"
}

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