About lab
This a model from the article: Role of individual ionic current systems in the SA node hypothesized by a modelstudy. Sarai N, Matsuoka S, Kuratomi S, Ono K, Noma A.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesarai2003-cardiacsanodepacemaker-lab
Created2026-05-17
Updated2026-05-17
cardiovascularsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_at_pi",
"label": "Initial At Pi",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_at_pi",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATPi`."
},
{
"name": "initial_ca_total_internal_ion_concentrations",
"label": "Initial Ca Total Internal Ion Concentrations",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_ca_total_internal_ion_concentrations",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Total_internal_ion_concentrations`."
},
{
"name": "initial_y3_st_channel_y3_gate",
"label": "Initial Y3 St Channel Y3 Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y3_st_channel_y3_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y3_st_channel_y3_gate`."
},
{
"name": "initial_y2_st_channel_y2_gate",
"label": "Initial Y2 St Channel Y2 Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y2_st_channel_y2_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y2_st_channel_y2_gate`."
},
{
"name": "initial_y1_st_channel_y1_gate",
"label": "Initial Y1 St Channel Y1 Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y1_st_channel_y1_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y1_st_channel_y1_gate`."
},
{
"name": "initial_y_sr_calcium_pump_y_gate",
"label": "Initial Y Sr Calcium Pump Y Gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.initial_y_sr_calcium_pump_y_gate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y_SR_calcium_pump_y_gate`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.species_labels"
},
{
"name": "at_pi",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.at_pi"
},
{
"name": "ca_total_internal_ion_concentrations",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.ca_total_internal_ion_concentrations"
},
{
"name": "y3_st_channel_y3_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y3_st_channel_y3_gate"
},
{
"name": "y2_st_channel_y2_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y2_st_channel_y2_gate"
},
{
"name": "y1_st_channel_y1_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y1_st_channel_y1_gate"
},
{
"name": "y_sr_calcium_pump_y_gate",
"maps_to": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.y_sr_calcium_pump_y_gate"
}
]
},
"tags": [
"cardiovascular",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Sarai2003 Cardiacsanodepacemaker Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model",
"alias": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_state"
],
"from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_summary"
],
"from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model_species_labels"
],
"from": "systemsbiology_sbml_sarai2003_cardiacsanodepacemaker_model1006230108_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This a model from the article: Role of individual ionic current systems in the SA node hypothesized by a modelstudy. Sarai N, Matsuoka S, Kuratomi S, Ono K, Noma A.",
"schema_version": "2.0"
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