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Burghaus2014 Simulating Blood Coagulation Factor Xa Inhibitors Lab

About lab

Mathematical model of blood coagulation factors II, VII, IX and X as well as protein C and protein S and the effect of warfarin on kinetic rates. It can be used to explore systemsbiology burghaus2014 simulating blood coagulation factor dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageburghaus2014-simulating-blood-coagulation-factor-xa-inhibitors-l
Created2026-05-17
Updated2026-05-17
pharmacologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_s_warfarin",
        "label": "Initial S Warfarin",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.initial_s_warfarin",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S_warfarin`."
      },
      {
        "name": "initial_r_warfarin",
        "label": "Initial R Warfarin",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.initial_r_warfarin",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R_warfarin`."
      },
      {
        "name": "initial_f_ii",
        "label": "Initial F Ii",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.initial_f_ii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `fII`."
      },
      {
        "name": "initial_model_state_f_x",
        "label": "Initial Model State F X",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.initial_model_state_f_x",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `fX`."
      },
      {
        "name": "initial_protein_s",
        "label": "Initial Protein S",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.initial_protein_s",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Protein_S`."
      },
      {
        "name": "initial_f_ix",
        "label": "Initial F Ix",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.initial_f_ix",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `fIX`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.species_labels"
      },
      {
        "name": "s_warfarin",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.s_warfarin"
      },
      {
        "name": "r_warfarin",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.r_warfarin"
      },
      {
        "name": "f_ii",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.f_ii"
      },
      {
        "name": "f_x",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.f_x"
      },
      {
        "name": "protein_s",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.protein_s"
      },
      {
        "name": "f_ix",
        "maps_to": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.f_ix"
      }
    ]
  },
  "tags": [
    "pharmacology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Burghaus2014 Simulating Blood Coagulation Factor Xa Inhibitors Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model",
      "alias": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model_state"
      ],
      "from": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model_summary"
      ],
      "from": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model_species_labels"
      ],
      "from": "systemsbiology_sbml_burghaus2014_simulating_blood_coagulation_factor_model1807180005_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Mathematical model of blood coagulation factors II, VII, IX and X as well as protein C and protein S and the effect of warfarin on kinetic rates. It can be used to explore systemsbiology burghaus2014 simulating blood coagulation factor dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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