Slaviero2021 - E. coli anaerobic central carbon and energy metabolism_Version1 Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 2,
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_bisphosphate",
        "units": "native SBML value",
        "default": 3,
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.initial_fructose_bisphosphate",
        "description": "Initial condition for fructose bisphosphate. Maps to bundled SBML symbol `FBP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glyceraldehyde_3_phosphate",
        "units": "native SBML value",
        "default": 0.5,
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.initial_glyceraldehyde_3_phosphate",
        "description": "Initial condition for glyceraldehyde 3 phosphate. Maps to bundled SBML symbol `GAP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_phosphoenolpyruvate",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.initial_phosphoenolpyruvate",
        "description": "Initial condition for phosphoenolpyruvate. Maps to bundled SBML symbol `PEP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pyruvate",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.initial_pyruvate",
        "description": "Initial condition for pyruvate. Maps to bundled SBML symbol `PYR`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.glucose_6_phosphate"
      },
      {
        "name": "fructose_bisphosphate",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.fructose_bisphosphate"
      },
      {
        "name": "glyceraldehyde_3_phosphate",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.glyceraldehyde_3_phosphate"
      },
      {
        "name": "phosphoenolpyruvate",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.phosphoenolpyruvate"
      },
      {
        "name": "pyruvate",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.pyruvate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.observable_labels"
      }
    ]
  },
  "title": "Slaviero2021 - E. coli anaerobic central carbon and energy metabolism_Version1 Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model",
      "alias": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model",
      "parameters": {
        "model_path": "data/MODEL2202020001.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model_observable_values"
      ],
      "from": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model_run_summary"
      ],
      "from": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model_observable_labels"
      ],
      "from": "metabolism_sbml_slaviero2021_e_coli_anaerobic_central_carbon_and_model2202020001_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This model describes the central carbon and energy metabolism of E. coli growing under anaerobic conditions.For complete information about the model see: 'Deciphering the physiological response of Esc.",
  "schema_version": "2.0"
}