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Hayer2005 Camkii Nopka Lab

About lab

This is the model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehayer2005-camkii-nopka-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_act_ca_mkii_minus_psd",
        "label": "Initial Act Ca Mkii Minus Psd",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_act_ca_mkii_minus_psd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD`."
      },
      {
        "name": "initial_nmdar",
        "label": "Initial Nmdar",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_nmdar",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NMDAR`."
      },
      {
        "name": "initial_ca_m_slash_ca_m_minus_psd",
        "label": "Initial Ca M Slash Ca M Minus Psd",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_ca_m_slash_ca_m_minus_psd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM_slash_CaM_minus_PSD`."
      },
      {
        "name": "initial_ca_m_slash_ca_m",
        "label": "Initial Ca M Slash Ca M",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_ca_m_slash_ca_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM_slash_CaM`."
      },
      {
        "name": "initial_tot_ca_mkii_cyt",
        "label": "Initial Tot Ca Mkii Cyt",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_tot_ca_mkii_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tot_CaMKII_cyt`."
      },
      {
        "name": "initial_ca_mkii_slash_ca_mkii",
        "label": "Initial Ca Mkii Slash Ca Mkii",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_ca_mkii_slash_ca_mkii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_CaMKII`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.species_labels"
      },
      {
        "name": "act_ca_mkii_minus_psd",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.act_ca_mkii_minus_psd"
      },
      {
        "name": "nmdar",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.nmdar"
      },
      {
        "name": "ca_m_slash_ca_m_minus_psd",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.ca_m_slash_ca_m_minus_psd"
      },
      {
        "name": "ca_m_slash_ca_m",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.ca_m_slash_ca_m"
      },
      {
        "name": "tot_ca_mkii_cyt",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.tot_ca_mkii_cyt"
      },
      {
        "name": "ca_mkii_slash_ca_mkii",
        "maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.ca_mkii_slash_ca_mkii"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Hayer2005 Camkii Nopka Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model",
      "alias": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model_state"
      ],
      "from": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model_summary"
      ],
      "from": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model_species_labels"
      ],
      "from": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1.",
  "schema_version": "2.0"
}

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