About lab
This is the model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehayer2005-camkii-nopka-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_act_ca_mkii_minus_psd",
"label": "Initial Act Ca Mkii Minus Psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_act_ca_mkii_minus_psd",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD`."
},
{
"name": "initial_nmdar",
"label": "Initial Nmdar",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_nmdar",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NMDAR`."
},
{
"name": "initial_ca_m_slash_ca_m_minus_psd",
"label": "Initial Ca M Slash Ca M Minus Psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_ca_m_slash_ca_m_minus_psd",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM_slash_CaM_minus_PSD`."
},
{
"name": "initial_ca_m_slash_ca_m",
"label": "Initial Ca M Slash Ca M",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_ca_m_slash_ca_m",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM_slash_CaM`."
},
{
"name": "initial_tot_ca_mkii_cyt",
"label": "Initial Tot Ca Mkii Cyt",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_tot_ca_mkii_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tot_CaMKII_cyt`."
},
{
"name": "initial_ca_mkii_slash_ca_mkii",
"label": "Initial Ca Mkii Slash Ca Mkii",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.initial_ca_mkii_slash_ca_mkii",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_CaMKII`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.species_labels"
},
{
"name": "act_ca_mkii_minus_psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.act_ca_mkii_minus_psd"
},
{
"name": "nmdar",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.nmdar"
},
{
"name": "ca_m_slash_ca_m_minus_psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.ca_m_slash_ca_m_minus_psd"
},
{
"name": "ca_m_slash_ca_m",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.ca_m_slash_ca_m"
},
{
"name": "tot_ca_mkii_cyt",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.tot_ca_mkii_cyt"
},
{
"name": "ca_mkii_slash_ca_mkii",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.ca_mkii_slash_ca_mkii"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Hayer2005 Camkii Nopka Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model",
"alias": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model_state"
],
"from": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model_summary"
],
"from": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model_species_labels"
],
"from": "systemsbiology_sbml_hayer2005_camkii_nopka_model3_model9086926384_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This is the model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1.",
"schema_version": "2.0"
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