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Mouse Iron Distribution Rich And Deficient Iron Diets Lab

About lab

Mouse Iron Distribution Dynamics Dynamic model of iron distribution in mice. This model attempts to fit the radioiron tracer data from Lopes et al.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemouse-iron-distribution-rich-and-deficient-iron-diets-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_fe_liver",
        "label": "Initial Fe Liver",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.initial_fe_liver",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeLiver_0`."
      },
      {
        "name": "initial_fe_liver_2",
        "label": "Initial Fe Liver 2",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.initial_fe_liver_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeLiver`."
      },
      {
        "name": "initial_fe_rbc",
        "label": "Initial Fe Rbc",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.initial_fe_rbc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeRBC_0`."
      },
      {
        "name": "initial_fe_duo",
        "label": "Initial Fe Duo",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.initial_fe_duo",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeDuo_0`."
      },
      {
        "name": "initial_fe_spleen",
        "label": "Initial Fe Spleen",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.initial_fe_spleen",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeSpleen_0`."
      },
      {
        "name": "initial_fe_rest",
        "label": "Initial Fe Rest",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.initial_fe_rest",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FeRest_0`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.species_labels"
      },
      {
        "name": "fe_liver",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.fe_liver"
      },
      {
        "name": "fe_liver_2",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.fe_liver_2"
      },
      {
        "name": "fe_rbc",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.fe_rbc"
      },
      {
        "name": "fe_duo",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.fe_duo"
      },
      {
        "name": "fe_spleen",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.fe_spleen"
      },
      {
        "name": "fe_rest",
        "maps_to": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.fe_rest"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Mouse Iron Distribution Rich And Deficient Iron Diets Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model",
      "alias": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model_state"
      ],
      "from": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model_summary"
      ],
      "from": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model_species_labels"
      ],
      "from": "systemsbiology_sbml_mouse_iron_distribution_rich_and_deficient_iron_biomd0000000734_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Mouse Iron Distribution Dynamics Dynamic model of iron distribution in mice. This model attempts to fit the radioiron tracer data from Lopes et al.",
  "schema_version": "2.0"
}

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