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Ueda2001 Circclock Lab

About lab

Bruce Shapiro: Generated by Cellerator Version 1.0 update 3.0303 using Mathematica 4.1 for Microsoft Windows (June 13, 2001), April 2, 2003 16:49:13, using (PC,x86, Microsoft Windows,WindowsNT,Windows. It can be used to explore systemsbiology ueda2001 circclock BioModels0000000022 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageueda2001-circclock-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_per_tim_nuc",
        "label": "Initial Per Tim Nuc",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_per_tim_nuc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PTn`."
      },
      {
        "name": "initial_dbt_cyt",
        "label": "Initial Dbt Cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_dbt_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000013`."
      },
      {
        "name": "initial_cyc_cyt",
        "label": "Initial Cyc Cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_cyc_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000012`."
      },
      {
        "name": "initial_per_tim_cyt",
        "label": "Initial Per Tim Cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_per_tim_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PTc`."
      },
      {
        "name": "initial_tim_cyt",
        "label": "Initial Tim Cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_tim_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Timc`."
      },
      {
        "name": "initial_tim_mrna",
        "label": "Initial Tim MRNA",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.initial_tim_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Timm`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.species_labels"
      },
      {
        "name": "per_tim_nuc",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.per_tim_nuc"
      },
      {
        "name": "dbt_cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.dbt_cyt"
      },
      {
        "name": "cyc_cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.cyc_cyt"
      },
      {
        "name": "per_tim_cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.per_tim_cyt"
      },
      {
        "name": "tim_cyt",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.tim_cyt"
      },
      {
        "name": "tim_mrna",
        "maps_to": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.tim_mrna"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Ueda2001 Circclock Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model",
      "alias": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model_state"
      ],
      "from": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model_summary"
      ],
      "from": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model_species_labels"
      ],
      "from": "systemsbiology_sbml_ueda2001_circclock_biomd0000000022_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Bruce Shapiro: Generated by Cellerator Version 1.0 update 3.0303 using Mathematica 4.1 for Microsoft Windows (June 13, 2001), April 2, 2003 16:49:13, using (PC,x86, Microsoft Windows,WindowsNT,Windows. It can be used to explore systemsbiology ueda2001 circclock BioModels0000000022 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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