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Restif2007 - Vaccination invasion Lab

About lab

Restif2007 - Vaccination invasion This model is described in the article: Vaccination and the dynamics of immune evasion. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagerestif2007-vaccination-invasion-lab
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_unresolved_immune_observable_1",
        "label": "Initial Unresolved Immune Observable 1",
        "units": "native source value",
        "default": 1,
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.initial_unresolved_immune_observable_1",
        "description": "Initial Unresolved Immune Observable 1. Sets the initial value of bundled SBML species `N`."
      },
      {
        "name": "initial_unresolved_immune_observable_2",
        "label": "Initial Unresolved Immune Observable 2",
        "units": "native source value",
        "default": 0.0588235,
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.initial_unresolved_immune_observable_2",
        "description": "Initial Unresolved Immune Observable 2. Sets the initial value of bundled SBML species `S`."
      },
      {
        "name": "initial_unresolved_immune_observable_3",
        "label": "Initial Unresolved Immune Observable 3",
        "units": "native source value",
        "default": 0.00176967,
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.initial_unresolved_immune_observable_3",
        "description": "Initial Unresolved Immune Observable 3. Sets the initial value of bundled SBML species `I1`."
      },
      {
        "name": "initial_unresolved_immune_observable_4",
        "label": "Initial Unresolved Immune Observable 4",
        "units": "native source value",
        "default": "1e-6",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.initial_unresolved_immune_observable_4",
        "description": "Initial Unresolved Immune Observable 4. Sets the initial value of bundled SBML species `I2`."
      },
      {
        "name": "initial_unresolved_immune_observable_5",
        "label": "Initial Unresolved Immune Observable 5",
        "units": "native source value",
        "default": 0.439407,
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.initial_unresolved_immune_observable_5",
        "description": "Initial Unresolved Immune Observable 5. Sets the initial value of bundled SBML species `R1`."
      },
      {
        "name": "vaccine_immune_period_yr_parameter",
        "label": "Vaccine Immune Period Yr Parameter",
        "units": "time",
        "default": 50,
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.vaccine_immune_period_yr_parameter",
        "description": "Vaccine Immune Period Yr Parameter. Sets bundled SBML parameter `tImm_V`."
      }
    ],
    "outputs": [
      {
        "name": "unresolved_immune_observable_1",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.unresolved_immune_observable_1"
      },
      {
        "name": "unresolved_immune_observable_2",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.unresolved_immune_observable_2"
      },
      {
        "name": "unresolved_immune_observable_3",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.unresolved_immune_observable_3"
      },
      {
        "name": "unresolved_immune_observable_4",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.unresolved_immune_observable_4"
      },
      {
        "name": "unresolved_immune_observable_5",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.unresolved_immune_observable_5"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.species_labels"
      }
    ]
  },
  "title": "Restif2007 - Vaccination invasion Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model",
      "alias": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model_state"
      ],
      "from": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model_summary"
      ],
      "from": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model_species_labels"
      ],
      "from": "immunology_sbml_restif2007_vaccination_invasion_biomd0000000294_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Restif2007 - Vaccination invasion This model is described in the article: Vaccination and the dynamics of immune evasion. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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