About lab
Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageyugi2014-insulin-induced-signalling-pfkl-phosphorylation-model-1
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimetabolic-signalinghormone-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_f6p_proxy",
"label": "Initial F6P Proxy",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.initial_f6p_proxy",
"description": "Initial level of F6P Proxy. Maps to SBML symbol `s22`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_pfkl_state",
"label": "source-defined PFKL state",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.source_defined_pfkl_state",
"description": "source-defined PFKL state. Maps to SBML symbol `s1` and is emitted in native SBML units."
},
{
"name": "fbpase",
"label": "Fbpase",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.fbpase",
"description": "Fbpase. Maps to SBML symbol `s2` and is emitted in native SBML units."
},
{
"name": "f6p",
"label": "F6P",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.f6p",
"description": "F6P. Maps to SBML symbol `s3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"metabolic-signaling",
"hormone-signaling"
],
"title": "Yugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 1 Lab",
"models": [
{
"path": "owned/models/signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model",
"alias": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model_state"
],
"from": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.state"
},
{
"to": [
"visualisation.signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model_summary"
],
"from": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model_species_labels"
],
"from": "signaling_sbml_yugi2014_insulin_induced_signalling_pfkl_phospho_biomd0000000540_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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