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Hayer2005 Ampar Traff 2 Lab

About lab

This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehayer2005-ampar-traff-2-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd",
        "label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD`."
      },
      {
        "name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
        "label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Slash Ca Mkii Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_slash_CaMKII_cplx`."
      },
      {
        "name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
        "label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 4 Sbc Slash Ca Mkii Sbo 4 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_4_sbc__slash_CaMKII_sbo_4_sbc__cplx`."
      },
      {
        "name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
        "label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 8 Sbc Slash Ca Mkii Sbo 8 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_8_sbc__slash_CaMKII_sbo_8_sbc__cplx`."
      },
      {
        "name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
        "label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 12 Sbc Slash Ca Mkii Sbo 12 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_12_sbc__slash_CaMKII_sbo_12_sbc__cplx`."
      },
      {
        "name": "initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx",
        "label": "Initial Ca Mkii Slash Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 6 Sbc Slash Ca Mkii Sbo 6 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.initial_ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII_slash_actCaMKII_minus_PSD_slash_CaMKII_sbo_6_sbc__slash_CaMKII_sbo_6_sbc__cplx`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.species_labels"
      },
      {
        "name": "ca_mkii_slash_act_ca_mkii_minus_psd",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd"
      },
      {
        "name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx"
      },
      {
        "name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx"
      },
      {
        "name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx"
      },
      {
        "name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx"
      },
      {
        "name": "ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.ca_mkii_slash_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_6_sbc_slash_ca_mkii_sbo_6_sbc_cplx"
      }
    ]
  },
  "tags": [
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Hayer2005 Ampar Traff 2 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model",
      "alias": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model_state"
      ],
      "from": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model_summary"
      ],
      "from": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model_species_labels"
      ],
      "from": "systemsbiology_sbml_hayer2005_ampar_traff_model1_model9086518048_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the basic model of AMPAR trafficking bistability. It is based on Hayer and Bhalla, PLoS Comput.",
  "schema_version": "2.0"
}

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