Proctor2007 - Silico Ubiquitin Proteasome System That Incorporates Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp_concentration",
        "label": "Initial ATP Concentration",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.initial_atp_concentration",
        "description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molecules"
        ]
      },
      {
        "name": "initial_nat_p",
        "label": "Initial Nat P",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.initial_nat_p",
        "description": "Initial value for Nat P. Maps to source symbol `NatP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molecules"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.variable_labels"
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "nat_p",
        "label": "Nat P",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.nat_p",
        "description": "Nat P. Maps to source symbol `NatP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "nat_p_refolded",
        "label": "Nat P Refolded",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.nat_p_refolded",
        "description": "Nat P Refolded. Maps to source symbol `NatP_refolded`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adp_concentration",
        "label": "ADP Concentration",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.adp_concentration",
        "description": "ADP Concentration. Maps to source symbol `ADP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "agg_p",
        "label": "Agg P",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.agg_p",
        "description": "Agg P. Maps to source symbol `AggP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "agg_p_proteasome",
        "label": "Agg P Proteasome",
        "maps_to": "physiology_cellml_proctor_2007_proctor2007_model.agg_p_proteasome",
        "description": "Agg P Proteasome. Maps to source symbol `AggP_Proteasome`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Proctor2007 - Silico Ubiquitin Proteasome System That Incorporates Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_proctor_2007_proctor2007_model",
      "parameters": {
        "model_path": "data/proctor_tsirigotis_gray_2007.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_proctor_2007_proctor2007_model_state"
      ],
      "from": "physiology_cellml_proctor_2007_proctor2007_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_proctor_2007_proctor2007_model_summary"
      ],
      "from": "physiology_cellml_proctor_2007_proctor2007_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_proctor_2007_proctor2007_model_trajectory"
      ],
      "from": "physiology_cellml_proctor_2007_proctor2007_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_proctor_2007_proctor2007_model_variable_labels"
      ],
      "from": "physiology_cellml_proctor_2007_proctor2007_model.variable_labels"
    }
  ],
  "package": "proctor2007-silico-ubiquitin-proteasome-system-that-incorporates",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.1",
  "description": "Source-faithful physiology lab for Proctor, 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}