Cui2008 - in vitro transcriptional response of zinc homeostasis system in Escherichia coli Lab

{
  "io": {
    "inputs": [
      {
        "name": "zinc_concentration",
        "maps_to": "cui2008_ecoli_zinc_transcription.zinc_concentration"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "cui2008_ecoli_zinc_transcription.state"
      },
      {
        "name": "summary",
        "maps_to": "cui2008_ecoli_zinc_transcription.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "cui2008_ecoli_zinc_transcription.species_labels"
      },
      {
        "name": "zinc_complex",
        "maps_to": "cui2008_ecoli_zinc_transcription.zinc_complex"
      },
      {
        "name": "zinc_promoter_state",
        "maps_to": "cui2008_ecoli_zinc_transcription.zinc_promoter_state"
      },
      {
        "name": "zinc_transcript_state",
        "maps_to": "cui2008_ecoli_zinc_transcription.zinc_transcript_state"
      }
    ]
  },
  "title": "Cui2008 - in vitro transcriptional response of zinc homeostasis system in Escherichia coli Lab",
  "models": [
    {
      "path": "owned/models/cui2008_ecoli_zinc_transcription",
      "alias": "cui2008_ecoli_zinc_transcription",
      "provenance": {
        "owned_path": "owned/models/cui2008_ecoli_zinc_transcription"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cui2008_ecoli_zinc_transcription_state"
      ],
      "from": "cui2008_ecoli_zinc_transcription.state"
    },
    {
      "to": [
        "visualisation.cui2008_ecoli_zinc_transcription_summary"
      ],
      "from": "cui2008_ecoli_zinc_transcription.summary"
    },
    {
      "to": [
        "visualisation.cui2008_ecoli_zinc_transcription_species_labels"
      ],
      "from": "cui2008_ecoli_zinc_transcription.species_labels"
    },
    {
      "to": [
        "visualisation.cui2008_ecoli_zinc_transcription_zinc_complex"
      ],
      "from": "cui2008_ecoli_zinc_transcription.zinc_complex"
    },
    {
      "to": [
        "visualisation.cui2008_ecoli_zinc_transcription_zinc_promoter_state"
      ],
      "from": "cui2008_ecoli_zinc_transcription.zinc_promoter_state"
    },
    {
      "to": [
        "visualisation.cui2008_ecoli_zinc_transcription_zinc_transcript_state"
      ],
      "from": "cui2008_ecoli_zinc_transcription.zinc_transcript_state"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Cui2008 - in vitro transcriptional response of zinc homeostasis system in Escherichia coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}